RNA id: TU1703557


Basic Information

Item Value
RNA id TU1703557
length 422
RNA type TUCP
GC content 0.43
exon number 1
gene id G1490016
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 76683599 ~ 76684020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgacaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaacattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1703535 lncRNA upstream 26573 76656438 ~ 76657026 (+) True gxylt2
TU1703541 lncRNA upstream 29166 76654184 ~ 76654433 (+) True G1490000
TU1703516 lncRNA upstream 77185 76605690 ~ 76606414 (+) True G1489975
TU1703452 lncRNA upstream 91364 76592022 ~ 76592235 (+) True G1489915
TU1703451 lncRNA upstream 91592 76591797 ~ 76592007 (+) True G1489914
TU1703564 lncRNA downstream 8672 76692692 ~ 76693000 (+) True G1490023
TU1703642 lncRNA downstream 113957 76797977 ~ 76842807 (+) True G1490098
TU1703683 lncRNA downstream 161670 76845690 ~ 76845956 (+) True G1490134
TU1703878 lncRNA downstream 195379 76879399 ~ 76879637 (+) True G1490317
TU1703881 lncRNA downstream 201525 76885545 ~ 76886318 (+) True G1490320
XM_021569815.2 mRNA upstream 10391 76663444 ~ 76673208 (+) False LOC110494602
XM_021569816.2 mRNA upstream 10391 76663444 ~ 76673208 (+) True LOC110494602
XM_021569813.2 mRNA upstream 26532 76640347 ~ 76657067 (+) False gxylt2
XM_021569812.2 mRNA upstream 26532 76640351 ~ 76657067 (+) False gxylt2
XM_021569814.2 mRNA upstream 26532 76640358 ~ 76657067 (+) False gxylt2
XM_021569822.2 mRNA downstream 482855 77166875 ~ 77261192 (+) False LOC110494606
XM_021569826.2 mRNA downstream 482855 77166875 ~ 77261192 (+) False LOC110494606
XM_021569828.2 mRNA downstream 482855 77166875 ~ 77261192 (+) False LOC110494606
XM_021569829.2 mRNA downstream 482855 77166875 ~ 77261192 (+) False LOC110494606
XM_021569825.2 mRNA downstream 531235 77215255 ~ 77261192 (+) False LOC110494606
TU1700469 other upstream 2274410 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 2704164 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 3401580 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 3558243 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 3638011 73044737 ~ 73045588 (+) True LOC110494525
TU1705554 other downstream 1324270 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 1334348 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 1504992 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 1504992 78189012 ~ 78190290 (+) False G1491963
TU1705741 other downstream 1568609 78252629 ~ 78253308 (+) True G1492003

Expression Profile