RNA id: TU1703642



Basic Information


Item Value
RNA id TU1703642
length 459
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G1490098
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 76797977 ~ 76842807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatgtatttatcttgctcctttgcaccccagtatctctacttgcacattcatcttctgcacatgtaccattccagtgtttaattggtatattgtaattacttcgccaacatggcctatttattgccttacccccatatcctacctcatttgcacactgtatatagactttttccccctactgtattattgactgtatgtttgtttattctctgtgttgttgtatgtgtcgaactgctttgctttatcttggccaggttgcagttgtaaatgagaacttgttcttaacttgcctacctggttaaataaaggttaaataaaataaataaataaataaatacaacattcCCCAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1703564 lncRNA upstream 104977 76692692 ~ 76693000 (+) True G1490023
TU1703535 lncRNA upstream 140951 76656438 ~ 76657026 (+) True gxylt2
TU1703541 lncRNA upstream 143544 76654184 ~ 76654433 (+) True G1490000
TU1703516 lncRNA upstream 191563 76605690 ~ 76606414 (+) True G1489975
TU1703452 lncRNA upstream 205742 76592022 ~ 76592235 (+) True G1489915
TU1703683 lncRNA downstream 2883 76845690 ~ 76845956 (+) True G1490134
TU1703878 lncRNA downstream 36592 76879399 ~ 76879637 (+) True G1490317
TU1703881 lncRNA downstream 42738 76885545 ~ 76886318 (+) True G1490320
TU1703902 lncRNA downstream 60974 76903781 ~ 76904002 (+) True G1490341
TU1703911 lncRNA downstream 71180 76913987 ~ 76914224 (+) True G1490350
XM_021569815.2 mRNA upstream 124769 76663444 ~ 76673208 (+) False LOC110494602
XM_021569816.2 mRNA upstream 124769 76663444 ~ 76673208 (+) True LOC110494602
XM_021569813.2 mRNA upstream 140910 76640347 ~ 76657067 (+) False gxylt2
XM_021569822.2 mRNA downstream 324068 77166875 ~ 77261192 (+) False LOC110494606
XM_021569826.2 mRNA downstream 324068 77166875 ~ 77261192 (+) False LOC110494606
XM_021569828.2 mRNA downstream 324068 77166875 ~ 77261192 (+) False LOC110494606
XM_021569829.2 mRNA downstream 324068 77166875 ~ 77261192 (+) False LOC110494606
XM_021569825.2 mRNA downstream 372448 77215255 ~ 77261192 (+) False LOC110494606
TU1703557 other upstream 113957 76683599 ~ 76684020 (+) True G1490016
TU1700469 other upstream 2388788 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 2818542 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 3515958 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 3672621 73122826 ~ 73125356 (+) True G1485260
TU1705554 other downstream 1165483 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 1175561 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 1346205 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 1346205 78189012 ~ 78190290 (+) False G1491963
TU1705741 other downstream 1409822 78252629 ~ 78253308 (+) True G1492003

Expression Profile