RNA id: TU1703911



Basic Information


Item Value
RNA id TU1703911
length 238
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1490350
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 76913987 ~ 76914224 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TATGTAATGCTCTCCCTAACCATCTGAGAGCTGCTCCATCAATCAGAACTTTTAAAACAGGCTTTAAAAAACACTTCTACAGACTGCCATTTTCATAGTCCTAGTCccaatctaaaatgtatttagcaCCAAGCCCACTATTGCTATTTTACCTGCCTTGATTCTAAATGTATGTTGTTTTTattgtacactaccgttcaaaagtttggggtcacttagaaatgtccttgtttttgag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1703902 lncRNA upstream 9985 76903781 ~ 76904002 (+) True G1490341
TU1703881 lncRNA upstream 27669 76885545 ~ 76886318 (+) True G1490320
TU1703878 lncRNA upstream 34350 76879399 ~ 76879637 (+) True G1490317
TU1703683 lncRNA upstream 68031 76845690 ~ 76845956 (+) True G1490134
TU1703642 lncRNA upstream 71180 76797977 ~ 76842807 (+) True G1490098
TU1703914 lncRNA downstream 733 76914957 ~ 76915190 (+) True G1490353
TU1703918 lncRNA downstream 2944 76917168 ~ 76917429 (+) True G1490357
TU1703932 lncRNA downstream 14426 76928650 ~ 76929176 (+) True G1490371
TU1703952 lncRNA downstream 30420 76944644 ~ 76944890 (+) True G1490390
TU1703962 lncRNA downstream 38766 76952990 ~ 76953204 (+) True G1490400
XM_021569815.2 mRNA upstream 240779 76663444 ~ 76673208 (+) False LOC110494602
XM_021569816.2 mRNA upstream 240779 76663444 ~ 76673208 (+) True LOC110494602
XM_021569813.2 mRNA upstream 256920 76640347 ~ 76657067 (+) False gxylt2
XM_021569822.2 mRNA downstream 252651 77166875 ~ 77261192 (+) False LOC110494606
XM_021569826.2 mRNA downstream 252651 77166875 ~ 77261192 (+) False LOC110494606
XM_021569828.2 mRNA downstream 252651 77166875 ~ 77261192 (+) False LOC110494606
XM_021569829.2 mRNA downstream 252651 77166875 ~ 77261192 (+) False LOC110494606
XM_021569825.2 mRNA downstream 301031 77215255 ~ 77261192 (+) False LOC110494606
TU1703557 other upstream 229967 76683599 ~ 76684020 (+) True G1490016
TU1700469 other upstream 2504798 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 2934552 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 3631968 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 3788631 73122826 ~ 73125356 (+) True G1485260
TU1705554 other downstream 1094066 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 1104144 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 1274788 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 1274788 78189012 ~ 78190290 (+) False G1491963
TU1705741 other downstream 1338405 78252629 ~ 78253308 (+) True G1492003

Expression Profile