RNA id: TU1703915


Basic Information

Item Value
RNA id TU1703915
length 228
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1490354
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 76915035 ~ 76915262 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACAGTTGTTATGATGATTAGAATATGTTATGTAAATTCCACGAAATGACTGTCTTTGCATCCTTTGGATATTAGAGGAcatgtacattagagtgtctagtttgagaaacagacgcctcacaagtcctcaactggcagcttcattaaatggtacccgcaaaacaccagtctcaacgtgaacagtgaagaggcgacaccgggatgctagccttcttcactgtcaacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1703899 lncRNA downstream 13101 76901501 ~ 76901934 (-) True G1490338
TU1703887 lncRNA downstream 25166 76889556 ~ 76889869 (-) True G1490326
TU1703880 lncRNA downstream 34036 76880694 ~ 76880999 (-) True G1490319
TU1703699 lncRNA downstream 215144 76698772 ~ 76699891 (-) True LOC110494603
TU1703747 lncRNA downstream 221753 76692908 ~ 76693282 (-) True G1490194
TU1703933 lncRNA upstream 13521 76928783 ~ 76929236 (-) True G1490372
TU1703944 lncRNA upstream 21604 76936866 ~ 76937071 (-) True G1490382
TU1703963 lncRNA upstream 37710 76952972 ~ 76953172 (-) True G1490401
TU1704142 lncRNA upstream 88542 77003804 ~ 77005581 (-) True G1490572
TU1704140 lncRNA upstream 93209 77008471 ~ 77013421 (-) True LOC110494605
XM_021569817.2 mRNA downstream 79172 76699461 ~ 76835863 (-) False LOC110494603
XM_021569819.2 mRNA downstream 138721 76699461 ~ 76776314 (-) False LOC110494603
XM_021569818.2 mRNA downstream 180781 76699461 ~ 76734254 (-) False LOC110494603
XM_036950694.1 mRNA downstream 343008 76545230 ~ 76572027 (-) True LOC110494599
XM_036950697.1 mRNA downstream 343011 76545230 ~ 76572024 (-) False LOC110494599
XM_021569820.2 mRNA upstream 92977 77008239 ~ 77087424 (-) False LOC110494605
XM_021569821.2 mRNA upstream 92977 77008239 ~ 77087427 (-) False LOC110494605
XM_036950708.1 mRNA upstream 856139 77771401 ~ 77956452 (-) False LOC110494609
XM_036950709.1 mRNA upstream 856139 77771401 ~ 77956452 (-) False LOC110494609
XM_036950704.1 mRNA upstream 856139 77771401 ~ 77956456 (-) False LOC110494609
TU1703698 other downstream 216939 76696796 ~ 76698096 (-) True G1490147
TU1702105 other downstream 1389439 75525182 ~ 75525596 (-) True G1488708
TU1701641 other downstream 1650812 75263720 ~ 75264223 (-) True G1488266
TU1701218 other downstream 2015288 74899391 ~ 74899747 (-) True G1487872
TU1700880 other downstream 2207426 74707345 ~ 74707609 (-) True G1487599
TU1704739 other upstream 566679 77481941 ~ 77482389 (-) True G1491128
TU1706388 other upstream 1172341 78087603 ~ 78088852 (-) True LOC110493260
TU1706362 other upstream 1299737 78214999 ~ 78219043 (-) True LOC110494620
TU1706560 other upstream 1557756 78473018 ~ 78475506 (-) True G1492729
TU1706741 other upstream 1855478 78770740 ~ 78771954 (-) True G1492897

Expression Profile