RNA id: TU1704747



Basic Information


Item Value
RNA id TU1704747
length 201
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1491136
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 77490863 ~ 77491063 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGATTAGGCCGATGCCTATGTGCTGTGAGTTTCTCCTGGTCTTTCTGTATTGGTTAACTTGAAGGCCAAGTTTGACACGTTGGTCCACCAGACTCTTTGAGCATTTGGGAGGAAGTGTCTGGGAACACAATGTCTTCTCTGTTGGTCCATTAAAGTTGAattgacagcattttagcaacattcaaatctgttcatatacac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1704724 lncRNA upstream 16823 77473792 ~ 77474040 (+) True G1491113
TU1704702 lncRNA upstream 34898 77455599 ~ 77455965 (+) True G1491092
TU1704461 lncRNA upstream 197657 77292844 ~ 77293206 (+) True G1490869
TU1704455 lncRNA upstream 199036 77291594 ~ 77291827 (+) True G1490863
TU1704433 lncRNA upstream 219265 77271316 ~ 77271598 (+) True G1490843
TU1704768 lncRNA downstream 17342 77508405 ~ 77508852 (+) True G1491157
TU1704769 lncRNA downstream 18141 77509204 ~ 77509513 (+) True G1491158
TU1704779 lncRNA downstream 23049 77514112 ~ 77514402 (+) True G1491168
TU1704795 lncRNA downstream 32914 77523977 ~ 77524238 (+) True G1491184
TU1704800 lncRNA downstream 36784 77527847 ~ 77528099 (+) True G1491189
XM_021569830.2 mRNA upstream 42162 77335285 ~ 77448701 (+) False LOC110494607
XM_036950698.1 mRNA upstream 42162 77335285 ~ 77448701 (+) True LOC110494607
XM_021569825.2 mRNA upstream 229671 77215255 ~ 77261192 (+) False LOC110494606
XM_021569831.2 mRNA downstream 61464 77552527 ~ 77771222 (+) False LOC110494608
XM_021569833.2 mRNA downstream 61464 77552527 ~ 77771222 (+) False LOC110494608
XM_021569832.2 mRNA downstream 61738 77552801 ~ 77771222 (+) True LOC110494608
LOC110493259 mRNA downstream 523280 78014343 ~ 78015218 (+) True LOC110493259
XR_005037083.1 mRNA downstream 537528 78028591 ~ 78029532 (+) True LOC110494613
TU1703557 other upstream 806843 76683599 ~ 76684020 (+) True G1490016
TU1700469 other upstream 3081674 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 3511428 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 4208844 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 4365507 73122826 ~ 73125356 (+) True G1485260
TU1705554 other downstream 517227 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 527305 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 697949 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 697949 78189012 ~ 78190290 (+) False G1491963
TU1705741 other downstream 761566 78252629 ~ 78253308 (+) True G1492003

Expression Profile