RNA id: TU1704769



Basic Information


Item Value
RNA id TU1704769
length 310
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1491158
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 77509204 ~ 77509513 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cttctaatgtaaatctatggcagcacaaAAGAGGCTTGAATTGTCTAGCTCTCCCTGCAGATTTTGCaatgacgtagtgtccccatgagttaCAGAACACTGAATCAAttacggcgcaactagagaacattaccaacccctaagctctgtattttccactggttgccccaccaccacagaaagcactgagctaggttgAAACACTTGCAtattggagctgccttactcaagaaagcaaaaaagagaccatgtttgtatgcagctttattattattattttggtgctccagagtggtgcagtggtctgagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1704768 lncRNA upstream 352 77508405 ~ 77508852 (+) True G1491157
TU1704747 lncRNA upstream 18141 77490863 ~ 77491063 (+) True G1491136
TU1704724 lncRNA upstream 35164 77473792 ~ 77474040 (+) True G1491113
TU1704702 lncRNA upstream 53239 77455599 ~ 77455965 (+) True G1491092
TU1704461 lncRNA upstream 215998 77292844 ~ 77293206 (+) True G1490869
TU1704779 lncRNA downstream 4599 77514112 ~ 77514402 (+) True G1491168
TU1704795 lncRNA downstream 14464 77523977 ~ 77524238 (+) True G1491184
TU1704800 lncRNA downstream 18334 77527847 ~ 77528099 (+) True G1491189
TU1704811 lncRNA downstream 22610 77532123 ~ 77532331 (+) True G1491200
TU1705033 lncRNA downstream 285279 77794792 ~ 77868915 (+) True G1491417
XM_021569830.2 mRNA upstream 60503 77335285 ~ 77448701 (+) False LOC110494607
XM_036950698.1 mRNA upstream 60503 77335285 ~ 77448701 (+) True LOC110494607
XM_021569825.2 mRNA upstream 248012 77215255 ~ 77261192 (+) False LOC110494606
XM_021569831.2 mRNA downstream 43014 77552527 ~ 77771222 (+) False LOC110494608
XM_021569833.2 mRNA downstream 43014 77552527 ~ 77771222 (+) False LOC110494608
XM_021569832.2 mRNA downstream 43288 77552801 ~ 77771222 (+) True LOC110494608
LOC110493259 mRNA downstream 504830 78014343 ~ 78015218 (+) True LOC110493259
XR_005037083.1 mRNA downstream 519078 78028591 ~ 78029532 (+) True LOC110494613
TU1703557 other upstream 825184 76683599 ~ 76684020 (+) True G1490016
TU1700469 other upstream 3100015 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 3529769 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 4227185 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 4383848 73122826 ~ 73125356 (+) True G1485260
TU1705554 other downstream 498777 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 508855 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 679499 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 679499 78189012 ~ 78190290 (+) False G1491963
TU1705741 other downstream 743116 78252629 ~ 78253308 (+) True G1492003

Expression Profile