RNA id: TU1704800



Basic Information


Item Value
RNA id TU1704800
length 253
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1491189
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 77527847 ~ 77528099 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgtagcgggaggacagctagtttccctcctctctgtacATTGACTACAATACAAAACTTAAGAGGCttgtggttctcacccccttccatagacttacacagtaattatgacaacttctggagtaCATCCTCCaatctatcagagctcttgcagcatgaactgacatgttgtccacccaatcaaagtaccagagaattaatctagtactgaaagcacaagctacagctagctagcgttgcaatgcataacatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1704795 lncRNA upstream 3609 77523977 ~ 77524238 (+) True G1491184
TU1704779 lncRNA upstream 13445 77514112 ~ 77514402 (+) True G1491168
TU1704769 lncRNA upstream 18334 77509204 ~ 77509513 (+) True G1491158
TU1704768 lncRNA upstream 18995 77508405 ~ 77508852 (+) True G1491157
TU1704747 lncRNA upstream 36784 77490863 ~ 77491063 (+) True G1491136
TU1704811 lncRNA downstream 4024 77532123 ~ 77532331 (+) True G1491200
TU1705033 lncRNA downstream 266693 77794792 ~ 77868915 (+) True G1491417
TU1705488 lncRNA downstream 429504 77957603 ~ 77957806 (+) True G1491831
TU1705553 lncRNA downstream 479930 78008029 ~ 78008253 (+) True G1491885
TU1705557 lncRNA downstream 481006 78009105 ~ 78010123 (+) True G1491889
XM_021569830.2 mRNA upstream 79146 77335285 ~ 77448701 (+) False LOC110494607
XM_036950698.1 mRNA upstream 79146 77335285 ~ 77448701 (+) True LOC110494607
XM_021569825.2 mRNA upstream 266655 77215255 ~ 77261192 (+) False LOC110494606
XM_021569831.2 mRNA downstream 24428 77552527 ~ 77771222 (+) False LOC110494608
XM_021569833.2 mRNA downstream 24428 77552527 ~ 77771222 (+) False LOC110494608
XM_021569832.2 mRNA downstream 24702 77552801 ~ 77771222 (+) True LOC110494608
LOC110493259 mRNA downstream 486244 78014343 ~ 78015218 (+) True LOC110493259
XR_005037083.1 mRNA downstream 500492 78028591 ~ 78029532 (+) True LOC110494613
TU1703557 other upstream 843827 76683599 ~ 76684020 (+) True G1490016
TU1700469 other upstream 3118658 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 3548412 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 4245828 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 4402491 73122826 ~ 73125356 (+) True G1485260
TU1705554 other downstream 480191 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 490269 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 660913 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 660913 78189012 ~ 78190290 (+) False G1491963
TU1705741 other downstream 724530 78252629 ~ 78253308 (+) True G1492003

Expression Profile