RNA id: TU1704811



Basic Information


Item Value
RNA id TU1704811
length 209
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1491200
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 77532123 ~ 77532331 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tttacataactattcagaccctttactcagtactttgttgacgcaCCTTTGGAAGcgtttacagccttgagtcttcgtgggtatgacgctacaagcttggcacacctgtatttggggagtttctcccattcttcattGCAggtcctctcaatctctgtcaggttggatggggagtgtcgctgcacagcaattttcatgtctctccagag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1704800 lncRNA upstream 4024 77527847 ~ 77528099 (+) True G1491189
TU1704795 lncRNA upstream 7885 77523977 ~ 77524238 (+) True G1491184
TU1704779 lncRNA upstream 17721 77514112 ~ 77514402 (+) True G1491168
TU1704769 lncRNA upstream 22610 77509204 ~ 77509513 (+) True G1491158
TU1704768 lncRNA upstream 23271 77508405 ~ 77508852 (+) True G1491157
TU1705033 lncRNA downstream 262461 77794792 ~ 77868915 (+) True G1491417
TU1705488 lncRNA downstream 425272 77957603 ~ 77957806 (+) True G1491831
TU1705553 lncRNA downstream 475698 78008029 ~ 78008253 (+) True G1491885
TU1705557 lncRNA downstream 476774 78009105 ~ 78010123 (+) True G1491889
TU1705560 lncRNA downstream 478255 78010586 ~ 78010787 (+) True G1491892
XM_021569830.2 mRNA upstream 83422 77335285 ~ 77448701 (+) False LOC110494607
XM_036950698.1 mRNA upstream 83422 77335285 ~ 77448701 (+) True LOC110494607
XM_021569825.2 mRNA upstream 270931 77215255 ~ 77261192 (+) False LOC110494606
XM_021569831.2 mRNA downstream 20196 77552527 ~ 77771222 (+) False LOC110494608
XM_021569833.2 mRNA downstream 20196 77552527 ~ 77771222 (+) False LOC110494608
XM_021569832.2 mRNA downstream 20470 77552801 ~ 77771222 (+) True LOC110494608
LOC110493259 mRNA downstream 482012 78014343 ~ 78015218 (+) True LOC110493259
XR_005037083.1 mRNA downstream 496260 78028591 ~ 78029532 (+) True LOC110494613
TU1703557 other upstream 848103 76683599 ~ 76684020 (+) True G1490016
TU1700469 other upstream 3122934 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 3552688 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 4250104 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 4406767 73122826 ~ 73125356 (+) True G1485260
TU1705554 other downstream 475959 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 486037 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 656681 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 656681 78189012 ~ 78190290 (+) False G1491963
TU1705741 other downstream 720298 78252629 ~ 78253308 (+) True G1492003

Expression Profile