RNA id: TU1705553



Basic Information


Item Value
RNA id TU1705553
length 225
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1491885
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78008029 ~ 78008253 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctgcaaatctaccaagacctggccttccctctaaactttcagctcatacaaggagaagtctgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatatacagctgaggtgggagactctgtccataggacaacaatcagtcatatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1705488 lncRNA upstream 50223 77957603 ~ 77957806 (+) True G1491831
TU1705033 lncRNA upstream 139114 77794792 ~ 77868915 (+) True G1491417
TU1704811 lncRNA upstream 475698 77532123 ~ 77532331 (+) True G1491200
TU1704800 lncRNA upstream 479930 77527847 ~ 77528099 (+) True G1491189
TU1704795 lncRNA upstream 483791 77523977 ~ 77524238 (+) True G1491184
TU1705557 lncRNA downstream 852 78009105 ~ 78010123 (+) True G1491889
TU1705560 lncRNA downstream 2333 78010586 ~ 78010787 (+) True G1491892
TU1705614 lncRNA downstream 77814 78086067 ~ 78086589 (+) True G1491925
TU1705617 lncRNA downstream 81926 78090179 ~ 78090496 (+) True G1491928
TU1705628 lncRNA downstream 114076 78122329 ~ 78122539 (+) True G1491939
XM_021569831.2 mRNA upstream 236807 77552527 ~ 77771222 (+) False LOC110494608
XM_021569833.2 mRNA upstream 236807 77552527 ~ 77771222 (+) False LOC110494608
XM_021569832.2 mRNA upstream 236807 77552801 ~ 77771222 (+) True LOC110494608
XM_021569830.2 mRNA upstream 559328 77335285 ~ 77448701 (+) False LOC110494607
LOC110493259 mRNA downstream 6090 78014343 ~ 78015218 (+) True LOC110493259
XR_005037083.1 mRNA downstream 20338 78028591 ~ 78029532 (+) True LOC110494613
NM_001124198.1 mRNA downstream 23234 78031487 ~ 78036695 (+) True lbp/bpi-2
XM_036947917.1 mRNA downstream 42716 78050969 ~ 78053292 (+) False tcbp2
XM_036947916.1 mRNA downstream 42739 78050992 ~ 78053292 (+) False tcbp2
TU1703557 other upstream 1324009 76683599 ~ 76684020 (+) True G1490016
TU1700469 other upstream 3598840 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 4028594 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 4726010 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 4882673 73122826 ~ 73125356 (+) True G1485260
TU1705554 other downstream 37 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 10115 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 180759 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 180759 78189012 ~ 78190290 (+) False G1491963
TU1705741 other downstream 244376 78252629 ~ 78253308 (+) True G1492003

Expression Profile