RNA id: TU1705555


Basic Information

Item Value
RNA id TU1705555
length 238
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1491887
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78008056 ~ 78008293 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatatgactgattgttgtcctatggacagagtctcccacctcagctgtatatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagacttctccttgtatgagctgaaagtttagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1705549 lncRNA downstream 2354 78003152 ~ 78005702 (-) False LOC110494612
TU1705551 lncRNA downstream 3684 78003152 ~ 78004372 (-) True LOC110494612
TU1705536 lncRNA downstream 17120 77983439 ~ 77990936 (-) True G1491870
TU1705518 lncRNA downstream 31404 77975987 ~ 77976652 (-) True LOC110494610
TU1705489 lncRNA downstream 49769 77958066 ~ 77958287 (-) True G1491832
TU1705556 lncRNA upstream 104 78008397 ~ 78008644 (-) True G1491888
TU1706383 lncRNA upstream 40970 78049263 ~ 78049672 (-) True G1492573
TU1706384 lncRNA upstream 41447 78049740 ~ 78050065 (-) True G1492574
TU1706369 lncRNA upstream 64921 78073214 ~ 78074149 (-) True G1492559
TU1706368 lncRNA upstream 117655 78125948 ~ 78131989 (-) True LOC110493261
XR_002469295.2 mRNA downstream 661 78005533 ~ 78007395 (-) False LOC110494612
XM_021569836.2 mRNA downstream 751 78005793 ~ 78007305 (-) False LOC110494612
XR_005037082.1 mRNA downstream 854 77996734 ~ 78007202 (-) False LOC110494612
LOC110494611 mRNA downstream 9132 77996734 ~ 77998924 (-) True LOC110494611
LOC118940494 mRNA downstream 17079 77989900 ~ 77990977 (-) True LOC118940494
XM_036950714.1 mRNA upstream 53885 78062178 ~ 78072449 (-) False LOC110494616
XM_036950713.1 mRNA upstream 53885 78062178 ~ 78072597 (-) False LOC110494616
XM_036950715.1 mRNA upstream 53885 78062178 ~ 78072597 (-) False LOC110494616
XM_036950716.1 mRNA upstream 53885 78062178 ~ 78072597 (-) True LOC110494616
XM_021569838.2 mRNA upstream 67055 78075348 ~ 78084251 (-) True LOC110494615
TU1704739 other downstream 525667 77481941 ~ 77482389 (-) True G1491128
TU1703698 other downstream 1309960 76696796 ~ 76698096 (-) True G1490147
TU1702105 other downstream 2482460 75525182 ~ 75525596 (-) True G1488708
TU1701641 other downstream 2743833 75263720 ~ 75264223 (-) True G1488266
TU1701218 other downstream 3108309 74899391 ~ 74899747 (-) True G1487872
TU1706388 other upstream 79310 78087603 ~ 78088852 (-) True LOC110493260
TU1706362 other upstream 206706 78214999 ~ 78219043 (-) True LOC110494620
TU1706560 other upstream 464725 78473018 ~ 78475506 (-) True G1492729
TU1706741 other upstream 762447 78770740 ~ 78771954 (-) True G1492897
TU1706762 other upstream 770059 78778352 ~ 78781395 (-) True G1492910

Expression Profile