RNA id: TU1705614



Basic Information


Item Value
RNA id TU1705614
length 523
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G1491925
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78086067 ~ 78086589 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTTCCACATTTAGAACACAAATCAACTATCTCTTCAGTTTGATGGAGGATATGGagttacattttttatatttaatgGAAAAACTATATAGAATCTCGactgtggatttggctattttaaCCACACCTGTTACGGACATGGGTAAAATTGAgtgcacagccatgcaatctcctcagaccaacattggcagtagaagcgctcagtgactttaaatgtgatagggtgccacctttccaacaagacgtatcgtcaaatttctgccctgctaaaactgccctggtcaactaagtgctgttattgtgacgtAAACTTCCAGGTGCAACAATGGCTCGGCCGTGAAGTGGTAAGCCACAggagctcacagaacgggaatgCTGAAGAGCGTAAACAATCTGTCCTAGTGCCAACAAGTtcggaggaataatggtctggggctgtttttcatggtttgggctaggccctttttagttccagtgaagggaaatcttaacactacagcatacaatgacattctagacaatt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1705560 lncRNA upstream 75280 78010586 ~ 78010787 (+) True G1491892
TU1705557 lncRNA upstream 75944 78009105 ~ 78010123 (+) True G1491889
TU1705553 lncRNA upstream 77814 78008029 ~ 78008253 (+) True G1491885
TU1705488 lncRNA upstream 128261 77957603 ~ 77957806 (+) True G1491831
TU1705033 lncRNA upstream 217152 77794792 ~ 77868915 (+) True G1491417
TU1705617 lncRNA downstream 3590 78090179 ~ 78090496 (+) True G1491928
TU1705628 lncRNA downstream 35740 78122329 ~ 78122539 (+) True G1491939
TU1705630 lncRNA downstream 37637 78124226 ~ 78125219 (+) True G1491941
TU1705636 lncRNA downstream 46599 78133188 ~ 78133414 (+) True G1491947
TU1705637 lncRNA downstream 46984 78133573 ~ 78133838 (+) True G1491948
XM_021569840.2 mRNA upstream 72 78084722 ~ 78085995 (+) False si:ch73-303b9.1
XM_021569842.2 mRNA upstream 72 78084910 ~ 78085995 (+) True si:ch73-303b9.1
XM_036950711.1 mRNA upstream 25257 78056325 ~ 78060810 (+) False LOC118940495
XM_036950712.1 mRNA upstream 25257 78056397 ~ 78060810 (+) True LOC118940495
XM_036947917.1 mRNA upstream 32775 78050969 ~ 78053292 (+) False tcbp2
XM_021569847.2 mRNA downstream 304316 78390905 ~ 78395729 (+) True LOC110494621
XM_021569848.2 mRNA downstream 309647 78396236 ~ 78403164 (+) False odad1
XM_021569850.2 mRNA downstream 309647 78396236 ~ 78403164 (+) False odad1
XR_002469296.2 mRNA downstream 309647 78396236 ~ 78412833 (+) False odad1
XM_021569855.2 mRNA downstream 336398 78422987 ~ 78425996 (+) False LOC110494624
TU1705568 other upstream 66251 78018368 ~ 78019816 (+) True G1491899
TU1705554 other upstream 77268 78008290 ~ 78008799 (+) True G1491886
TU1703557 other upstream 1402047 76683599 ~ 76684020 (+) True G1490016
TU1700469 other upstream 3676878 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 4106632 73978890 ~ 73979435 (+) True G1486811
TU1705667 other downstream 102423 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 102423 78189012 ~ 78190290 (+) False G1491963
TU1705741 other downstream 166040 78252629 ~ 78253308 (+) True G1492003
TU1706084 other downstream 684158 78770747 ~ 78773759 (+) False G1492310
TU1706085 other downstream 686640 78773229 ~ 78775727 (+) True G1492310

Expression Profile