RNA id: TU1705691



Basic Information


Item Value
RNA id TU1705691
length 329
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G1491966
representative False

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78186089 ~ 78187119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GATTAAACTACTACTAGGTTACTTCTACAAATACTACAGTACTATTATTATTTGTACTACTattacagtagcctactactACACTATTTATAGCCATGAAGAGctctgaaaggctggtcatggctcacatcaacatcatcatgctggaaaccctagacccactctgccccaacagatccacagatgacacaatctcaaccgcattccacactgccctttcccacctggacaaaaggaacacctatgtgagaatgctttgactacagctcagtgttcaacaccatagtgccctcaaagcacatcaataaactaaggaccctgggattaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1705680 lncRNA upstream 82 78185036 ~ 78186007 (+) False G1491965
TU1705683 lncRNA upstream 143 78185036 ~ 78185946 (+) True G1491965
TU1705698 lncRNA upstream 8188 78177694 ~ 78177901 (+) True G1491972
TU1705696 lncRNA upstream 10244 78175623 ~ 78175845 (+) True G1491970
TU1705637 lncRNA upstream 52251 78133573 ~ 78133838 (+) True G1491948
TU1705685 lncRNA downstream 334 78186751 ~ 78187119 (+) True G1491966
TU1705656 lncRNA downstream 2595 78189012 ~ 78190290 (+) False G1491963
TU1705670 lncRNA downstream 2595 78189012 ~ 78190290 (+) False G1491963
TU1705671 lncRNA downstream 2595 78189012 ~ 78190290 (+) True G1491963
TU1705702 lncRNA downstream 5183 78191600 ~ 78193502 (+) False G1491976
XM_021569840.2 mRNA upstream 100094 78084722 ~ 78085995 (+) False si:ch73-303b9.1
XM_021569842.2 mRNA upstream 100094 78084910 ~ 78085995 (+) True si:ch73-303b9.1
XM_036950711.1 mRNA upstream 125279 78056325 ~ 78060810 (+) False LOC118940495
XM_036950712.1 mRNA upstream 125279 78056397 ~ 78060810 (+) True LOC118940495
NM_001281421.1 mRNA upstream 132888 78051765 ~ 78053201 (+) True tcbp2
XM_021569847.2 mRNA downstream 204488 78390905 ~ 78395729 (+) True LOC110494621
XM_021569848.2 mRNA downstream 209819 78396236 ~ 78403164 (+) False odad1
XM_021569850.2 mRNA downstream 209819 78396236 ~ 78403164 (+) False odad1
XR_002469296.2 mRNA downstream 209819 78396236 ~ 78412833 (+) False odad1
XM_021569855.2 mRNA downstream 236570 78422987 ~ 78425996 (+) False LOC110494624
TU1705568 other upstream 166273 78018368 ~ 78019816 (+) True G1491899
TU1705554 other upstream 177290 78008290 ~ 78008799 (+) True G1491886
TU1703557 other upstream 1502069 76683599 ~ 76684020 (+) True G1490016
TU1700469 other upstream 3776900 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 4206654 73978890 ~ 73979435 (+) True G1486811
TU1705667 other downstream 2595 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 2595 78189012 ~ 78190290 (+) False G1491963
TU1705741 other downstream 66212 78252629 ~ 78253308 (+) True G1492003
TU1706084 other downstream 584330 78770747 ~ 78773759 (+) False G1492310
TU1706085 other downstream 586812 78773229 ~ 78775727 (+) True G1492310

Expression Profile