RNA id: TU1705670


Basic Information

Item Value
RNA id TU1705670
length 1175
lncRNA type antisense_over
GC content 0.47
exon number 3
gene id G1491963
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78189012 ~ 78190290 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCATCTGTTTTATAAGAAACCACATGACGCAGTGAGCTTGTTCCCCACGAGACAGAAATTCCCCCAATGGTTTGCAGAACACCCCTCTCACAAACACCCAACCACGCACACATAAGGCTCAAACACAAATACCTTTCACtttcacattattaaagtgtctttAGTTTACATCGTGATGAGTTTAGTTGTTTCTTGTTTACTCAGGAAAACCTCCTGTTTGTCAGTCTACTCTTCATCGGTCATTCTCAAACCAGTTGGCACTGAGTCAAATTGAGAGGTTGTAGATATTCAGTAATTCCACAGTGAAGTCCGGAGGGCCTTCAAATCCTCAAAACGTTaccgagagcatcttgactggctgcatcaccgcttggtaggGTATATGTACGTATGGccatacatcactggggccgagctccctgccacccaggtcctctataccaggccgtgtcagaggaaggccccaaaaatggtcaaagactccagcctctctctaccgcatggcaagcggcaacttctacccccaagccataagacttctaaacaagactgctaaatagctaatcaattggcaggttactgtctgtctgtatgtgtgtgtgctctgctAGTGTTTCTCTGCATGTCATTTCCTCATGTTTCATGTCTGAAGGCAGCTGATGTCACCCACTGTATGTTCTCCCTTGTGACTTTGTAGCCGGGAAATCATTTCAACATAAACAAATGTTTAAATCGCATTATGATTTCACACGTCCAGTGGTTCATTTATGGGTTTAATCATGGTACACACATACTAATGAGACCATATTGGCTTGGTCCTGAGCTTCCGTTTGACCCATTTCAGCAGGAGCACTGGGTAGATGAGGGAAtctatctacccctctctcttctgtctgtctgtctgtctgtctgtctgttcatctgtctgtctgtctgttcgtctgtctgttcatccgtccgtctgtctgtctgttcatccgtccgtccgtccgtctgtctgtctgttcatccgtccgtctgtctgtctgtctgtctgtctgttcatctgtctgtctgtctgtctgtctgttaatctgtctgtctgtctgagtgtgtgtgtgtggttgtctggTCACAGTCCGATGGGTCTGGGTAGATCAGGCTCCAGCATAGTTGCAGAGGTTACAGCTCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1705685 lncRNA upstream 1893 78186751 ~ 78187119 (+) True G1491966
TU1705691 lncRNA upstream 2595 78186089 ~ 78186417 (+) False G1491966
TU1705680 lncRNA upstream 3005 78185036 ~ 78186007 (+) False G1491965
TU1705683 lncRNA upstream 3066 78185036 ~ 78185946 (+) True G1491965
TU1705698 lncRNA upstream 11111 78177694 ~ 78177901 (+) True G1491972
TU1705702 lncRNA downstream 1310 78191600 ~ 78193502 (+) False G1491976
TU1705704 lncRNA downstream 1310 78191600 ~ 78193502 (+) False G1491976
TU1705705 lncRNA downstream 1310 78191600 ~ 78192486 (+) True G1491976
TU1705706 lncRNA downstream 3323 78193613 ~ 78194049 (+) False G1491977
TU1705707 lncRNA downstream 3323 78193613 ~ 78246889 (+) False G1491977
XM_021569840.2 mRNA upstream 103017 78084722 ~ 78085995 (+) False si:ch73-303b9.1
XM_021569842.2 mRNA upstream 103017 78084910 ~ 78085995 (+) True si:ch73-303b9.1
XM_036950711.1 mRNA upstream 128202 78056325 ~ 78060810 (+) False LOC118940495
XM_036950712.1 mRNA upstream 128202 78056397 ~ 78060810 (+) True LOC118940495
NM_001281421.1 mRNA upstream 135811 78051765 ~ 78053201 (+) True tcbp2
XM_021569847.2 mRNA downstream 200615 78390905 ~ 78395729 (+) True LOC110494621
XM_021569848.2 mRNA downstream 205946 78396236 ~ 78403164 (+) False odad1
XM_021569850.2 mRNA downstream 205946 78396236 ~ 78403164 (+) False odad1
XR_002469296.2 mRNA downstream 205946 78396236 ~ 78412833 (+) False odad1
XM_021569855.2 mRNA downstream 232697 78422987 ~ 78425996 (+) False LOC110494624
TU1705568 other upstream 169196 78018368 ~ 78019816 (+) True G1491899
TU1705554 other upstream 180213 78008290 ~ 78008799 (+) True G1491886
TU1703557 other upstream 1504992 76683599 ~ 76684020 (+) True G1490016
TU1700469 other upstream 3779823 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 4209577 73978890 ~ 73979435 (+) True G1486811
TU1705741 other downstream 62339 78252629 ~ 78253308 (+) True G1492003
TU1706084 other downstream 580457 78770747 ~ 78773759 (+) False G1492310
TU1706085 other downstream 582939 78773229 ~ 78775727 (+) True G1492310
TU1707053 other downstream 1139329 79329619 ~ 79336072 (+) True LOC110493267
TU1707042 other downstream 1192355 79382645 ~ 79385437 (+) False tusc2