RNA id: TU1705741



Basic Information


Item Value
RNA id TU1705741
length 680
RNA type TUCP
GC content 0.47
exon number 1
gene id G1492003
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78252629 ~ 78253308 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGCTGAGATGGATGCTGGACTACATAATCAGTTGTTCTCTGGCCCCCAGAAAGACTGCTGGAGTATGTATCTATTTTTACCATGCCCAACAggttgtgtgtatatgtgtacttACGTCGATGATATCAGACAAGTCGTGGATGTAGTATTTGAAGACACAGCTGTTTGTAGCCTCCAGAGCCAGCAGGTATTCATTCCTTGCCTTGATTGCTTTCAGCTTGTTCTCTGTGTACTTAGCCTGCCGctgagagggacacagagagagagagggggggtgaaagagagcaagagagagaggacgagaacgagagagacagcgagagagaacgagagaggtaaaaagagaggatatagagagagagggggagtgagagtgagagaaggagagagaaaaataagagATAGAGAgtagatagagggagaaagagagagaggaagatagagggagtgagaggagagagggagaaagagaggatatagagaggagataggagagggagtgagaggagagagggagaaagagagagaggaagagagagagggggtgagagtgagaggagagagagggagaaaaatatGAGATAGTGAGttgatagagggagaaagagagagaggaagagagagggagtgagagtgagaaagagagataacAGGATTGAGAGTGAGAACAAAGTTTATAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1705740 lncRNA upstream 1167 78251244 ~ 78251462 (+) True G1492002
TU1705739 lncRNA upstream 1659 78250469 ~ 78250970 (+) True G1492001
TU1705738 lncRNA upstream 4455 78247635 ~ 78248174 (+) True G1492000
TU1705707 lncRNA upstream 5740 78193613 ~ 78246889 (+) False G1491977
TU1705735 lncRNA upstream 10166 78241252 ~ 78242463 (+) True G1491997
TU1705743 lncRNA downstream 1828 78255136 ~ 78255347 (+) True G1492005
TU1705745 lncRNA downstream 4725 78258033 ~ 78258288 (+) True G1492007
TU1705750 lncRNA downstream 7813 78261121 ~ 78261330 (+) True G1492009
TU1705828 lncRNA downstream 129508 78382816 ~ 78383045 (+) True G1492080
TU1705832 lncRNA downstream 133591 78386899 ~ 78387434 (+) False G1492083
XM_021569840.2 mRNA upstream 166634 78084722 ~ 78085995 (+) False si:ch73-303b9.1
XM_021569842.2 mRNA upstream 166634 78084910 ~ 78085995 (+) True si:ch73-303b9.1
XM_036950711.1 mRNA upstream 191819 78056325 ~ 78060810 (+) False LOC118940495
XM_036950712.1 mRNA upstream 191819 78056397 ~ 78060810 (+) True LOC118940495
NM_001281421.1 mRNA upstream 199428 78051765 ~ 78053201 (+) True tcbp2
XM_021569847.2 mRNA downstream 137597 78390905 ~ 78395729 (+) True LOC110494621
XM_021569848.2 mRNA downstream 142928 78396236 ~ 78403164 (+) False odad1
XM_021569850.2 mRNA downstream 142928 78396236 ~ 78403164 (+) False odad1
XR_002469296.2 mRNA downstream 142928 78396236 ~ 78412833 (+) False odad1
XM_021569855.2 mRNA downstream 169679 78422987 ~ 78425996 (+) False LOC110494624
TU1705667 other upstream 62339 78189012 ~ 78190290 (+) False G1491963
TU1705669 other upstream 62339 78189012 ~ 78190290 (+) False G1491963
TU1705568 other upstream 232813 78018368 ~ 78019816 (+) True G1491899
TU1705554 other upstream 243830 78008290 ~ 78008799 (+) True G1491886
TU1703557 other upstream 1568609 76683599 ~ 76684020 (+) True G1490016
TU1706084 other downstream 517439 78770747 ~ 78773759 (+) False G1492310
TU1706085 other downstream 519921 78773229 ~ 78775727 (+) True G1492310
TU1707053 other downstream 1076311 79329619 ~ 79336072 (+) True LOC110493267
TU1707042 other downstream 1129337 79382645 ~ 79385437 (+) False tusc2
TU1707040 other downstream 1130487 79383795 ~ 79385437 (+) False tusc2

Expression Profile