RNA id: TU1706008


Basic Information

Item Value
RNA id TU1706008
length 226
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1492239
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78653109 ~ 78653334 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATGGTTGACCCGCTTTAGGGAGTTTATGGAATGGAAAATGGCTAAATGTATGGTTGACCAGCTTTAGGGAGTTTATGGAATGGAAAATGGCTAAATGTATGGTTGACCAGCTTTAGGGAGTTTATGGAATGGAAAATGGATAAATGTATGGTTGACCAGCTTTAGGGAGTTTATGGAATGGAAAATGGATAAATGTATGGTTGACCAGAAAAAGTGATTACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1705986 lncRNA upstream 22706 78624718 ~ 78630403 (+) True G1492219
TU1705878 lncRNA upstream 169509 78480780 ~ 78483600 (+) True G1492125
TU1705857 lncRNA upstream 212122 78440778 ~ 78440987 (+) True G1492106
TU1705850 lncRNA upstream 218792 78434050 ~ 78434317 (+) True G1492099
TU1705814 lncRNA upstream 240253 78411384 ~ 78412856 (+) True odad1
TU1705953 lncRNA downstream 19543 78672877 ~ 78673046 (+) True G1492193
TU1705954 lncRNA downstream 19824 78673158 ~ 78673551 (+) True G1492194
TU1706019 lncRNA downstream 29722 78683056 ~ 78683313 (+) True G1492249
TU1706020 lncRNA downstream 30129 78683463 ~ 78683929 (+) True G1492250
TU1706021 lncRNA downstream 30611 78683945 ~ 78684157 (+) True G1492251
XM_036948245.1 mRNA upstream 12227 78597140 ~ 78640882 (+) False LOC110494629
XM_036948246.1 mRNA upstream 12227 78597140 ~ 78640882 (+) False LOC110494629
XM_036948248.1 mRNA upstream 12227 78597140 ~ 78640882 (+) False LOC110494629
XM_036948243.1 mRNA upstream 12227 78597143 ~ 78640882 (+) False LOC110494629
XM_036948244.1 mRNA upstream 12227 78597143 ~ 78640882 (+) False LOC110494629
XM_021569868.2 mRNA downstream 257 78653591 ~ 78669747 (+) False LOC110494631
XM_036948251.1 mRNA downstream 873 78654207 ~ 78669747 (+) True LOC110494631
XM_021569873.2 mRNA downstream 21043 78674377 ~ 78681299 (+) False LOC110494632
XM_021569870.2 mRNA downstream 21044 78674378 ~ 78681299 (+) False LOC110494632
XM_021569871.2 mRNA downstream 21044 78674378 ~ 78681299 (+) False LOC110494632
TU1705741 other upstream 399801 78252629 ~ 78253308 (+) True G1492003
TU1705667 other upstream 462819 78189012 ~ 78190290 (+) False G1491963
TU1705669 other upstream 462819 78189012 ~ 78190290 (+) False G1491963
TU1705568 other upstream 633293 78018368 ~ 78019816 (+) True G1491899
TU1705554 other upstream 644310 78008290 ~ 78008799 (+) True G1491886
TU1706084 other downstream 117413 78770747 ~ 78773759 (+) False G1492310
TU1706085 other downstream 119895 78773229 ~ 78775727 (+) True G1492310
TU1707053 other downstream 676285 79329619 ~ 79336072 (+) True LOC110493267
TU1707042 other downstream 729311 79382645 ~ 79385437 (+) False tusc2
TU1707040 other downstream 730461 79383795 ~ 79385437 (+) False tusc2

Expression Profile