RNA id: TU1706759


Basic Information

Item Value
RNA id TU1706759
length 387
lncRNA type read_through
GC content 0.59
exon number 2
gene id G1492908
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78775102 ~ 78775595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgcaacccccccacacaaacactgagccatgcaacccccacacacactgagccatgcaacccccacacacacactgagccatgcaaccccccacaaacacacaccatgcCATGCAACCCCCCCACAAACACTGAGCCATGCTacccacacactgagccatgcaacccacacactgagccatgcaacccccccccacacacacacacactgagccatgcaacccccctccccacacacacacacacacactgagccatgctacccacacactgagccatgcaacccacacactgAGCAATGCAacccacacactgagccatgcaacccgcccccacacacacagagccatgctacccacacactgagccatgcaacccacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1706732 lncRNA downstream 30634 78741264 ~ 78744468 (-) True LOC110493264
TU1706689 lncRNA downstream 91138 78683688 ~ 78683964 (-) True G1492851
TU1706687 lncRNA downstream 92978 78681882 ~ 78682124 (-) True G1492849
TU1706632 lncRNA downstream 101582 78672865 ~ 78673520 (-) True G1492797
TU1706631 lncRNA downstream 102934 78671913 ~ 78672168 (-) True G1492796
TU1706742 lncRNA upstream 706 78776301 ~ 78815429 (-) False G1492898
TU1706745 lncRNA upstream 1008 78776603 ~ 78815429 (-) False G1492898
TU1706761 lncRNA upstream 1614 78777209 ~ 78778233 (-) True G1492909
TU1706764 lncRNA upstream 2894 78778489 ~ 78791914 (-) True G1492911
TU1706765 lncRNA upstream 7548 78783143 ~ 78786323 (-) True G1492912
XM_021569867.2 mRNA downstream 123259 78642915 ~ 78651843 (-) True LOC110494630
XM_036948232.1 mRNA downstream 267004 78484389 ~ 78508098 (-) True LOC110494625
LOC110494623 mRNA downstream 342529 78427699 ~ 78432573 (-) True LOC110494623
XM_036950727.1 mRNA downstream 385253 78217831 ~ 78389849 (-) False LOC110494620
XM_021569887.2 mRNA upstream 516851 79292446 ~ 79297728 (-) True LOC110494643
XM_021569900.2 mRNA upstream 539605 79315200 ~ 79319147 (-) False LOC110494645
XM_036948234.1 mRNA upstream 539605 79315200 ~ 79319780 (-) False LOC110494645
XM_021569893.2 mRNA upstream 539605 79315200 ~ 79319798 (-) False LOC110494645
XM_021569899.2 mRNA upstream 539605 79315200 ~ 79319798 (-) False LOC110494645
TU1706741 other downstream 3148 78770740 ~ 78771954 (-) True G1492897
TU1706560 other downstream 299596 78473018 ~ 78475506 (-) True G1492729
TU1706362 other downstream 556059 78214999 ~ 78219043 (-) True LOC110494620
TU1706388 other downstream 686250 78087603 ~ 78088852 (-) True LOC110493260
TU1704739 other downstream 1292713 77481941 ~ 77482389 (-) True G1491128
TU1706762 other upstream 2757 78778352 ~ 78781395 (-) True G1492910
TU1706752 other upstream 28265 78803860 ~ 78813955 (-) True G1492901
TU1706748 other upstream 31544 78807139 ~ 78815429 (-) True G1492898
TU1707296 other upstream 572636 79348231 ~ 79349389 (-) True G1493395
TU1708035 other upstream 1296044 80071639 ~ 80087637 (-) True G1494054

Expression Profile