RNA id: TU1706089



Basic Information


Item Value
RNA id TU1706089
length 209
lncRNA type read_through
GC content 0.55
exon number 2
gene id G1492314
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78779964 ~ 78810967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agtgtgtgtgtgttggtgggttgcatggctcagtgtgtgtgtgtgtgggttgcatggctcagtgtgtgtgtgtgtgtgggttgcatggctcagtgtgtgtgtgtgtgggttgcatggctcagtgtgtttgtgtgtgtgtgggttgcatggctcagtgtgtgtgtgtgggttgcatggctcagtgtgtgtgtgtgtgggttgcatggccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1706082 lncRNA upstream 33427 78746260 ~ 78746537 (+) True G1492308
TU1706068 lncRNA upstream 34348 78745255 ~ 78745616 (+) True G1492295
TU1706071 lncRNA upstream 51458 78719467 ~ 78728506 (+) False LOC110494635
TU1706072 lncRNA upstream 51458 78719467 ~ 78728506 (+) True LOC110494635
TU1706021 lncRNA upstream 95807 78683945 ~ 78684157 (+) True G1492251
TU1706146 lncRNA downstream 124168 78935135 ~ 78935476 (+) True G1492369
TU1706148 lncRNA downstream 125380 78936347 ~ 78936629 (+) True G1492371
TU1707047 lncRNA downstream 434988 79245955 ~ 79293250 (+) True G1493174
TU1707063 lncRNA downstream 479329 79290296 ~ 79291967 (+) True G1493185
TU1707064 lncRNA downstream 487578 79298545 ~ 79306714 (+) False LOC110494644
XM_021569874.2 mRNA upstream 50967 78719388 ~ 78728997 (+) False LOC110494635
XM_021569873.2 mRNA upstream 98665 78674377 ~ 78681299 (+) False LOC110494632
XM_021569876.2 mRNA downstream 6196 78817163 ~ 78914408 (+) False LOC110494637
XM_036948242.1 mRNA downstream 15668 78826635 ~ 78914408 (+) False LOC110494637
XM_036948241.1 mRNA downstream 18922 78829889 ~ 78914408 (+) False LOC110494637
XM_036948239.1 mRNA downstream 28524 78839491 ~ 78914408 (+) False LOC110494637
XM_036948240.1 mRNA downstream 28524 78839491 ~ 78914408 (+) False LOC110494637
TU1706085 other upstream 4237 78773229 ~ 78775727 (+) True G1492310
TU1706084 other upstream 6205 78770747 ~ 78773759 (+) False G1492310
TU1705741 other upstream 526656 78252629 ~ 78253308 (+) True G1492003
TU1705667 other upstream 589674 78189012 ~ 78190290 (+) False G1491963
TU1707053 other downstream 518652 79329619 ~ 79336072 (+) True LOC110493267
TU1707042 other downstream 571678 79382645 ~ 79385437 (+) False tusc2
TU1707040 other downstream 572828 79383795 ~ 79385437 (+) False tusc2
TU1707041 other downstream 572828 79383795 ~ 79385437 (+) True tusc2
TU1709446 other downstream 2482473 81293440 ~ 81293926 (+) True G1495346

Expression Profile