RNA id: TU1706850


Basic Information

Item Value
RNA id TU1706850
length 230
lncRNA type intronic
GC content 0.46
exon number 1
gene id G1492994
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78924831 ~ 78925060 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCACTTTTCTGGAGTAAAATATTCAAATTAGGAGACAATGGAACACTGATTGACTAGCCCTGCAAAGTCGGTGCCACCCTGCTCTGGAGCAGGGCCAGCAAGACCACTTTTTTTATGAGTGTGAAAACGCTGGAATTAGAATGCACCGTAGTGAATGAGAGAAAACAGACAGGCCGCGAGCGTCAATGCCGTCATGCACTTCACATTAGAACGCAAGTCTATTTTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1706848 lncRNA downstream 1930 78922581 ~ 78922901 (-) True G1492992
TU1706742 lncRNA downstream 109402 78776301 ~ 78815429 (-) False G1492898
TU1706745 lncRNA downstream 109402 78776603 ~ 78815429 (-) False G1492898
TU1706756 lncRNA downstream 113564 78806773 ~ 78811267 (-) True G1492905
TU1706753 lncRNA downstream 114848 78805047 ~ 78809983 (-) True G1492902
TU1706855 lncRNA upstream 10631 78935691 ~ 78935910 (-) True G1492999
TU1706856 lncRNA upstream 11872 78936932 ~ 78937235 (-) True G1493000
TU1706862 lncRNA upstream 22100 78947160 ~ 78947483 (-) True G1493006
TU1706939 lncRNA upstream 138634 79063694 ~ 79066597 (-) True G1493079
TU1706979 lncRNA upstream 207212 79132272 ~ 79135716 (-) True G1493115
XR_005036719.1 mRNA downstream 88437 78741202 ~ 78836394 (-) False LOC110493264
XM_021569867.2 mRNA downstream 272988 78642915 ~ 78651843 (-) True LOC110494630
XM_036948232.1 mRNA downstream 416733 78484389 ~ 78508098 (-) True LOC110494625
LOC110494623 mRNA downstream 492258 78427699 ~ 78432573 (-) True LOC110494623
XM_036950728.1 mRNA downstream 534982 78217831 ~ 78389849 (-) False LOC110494620
XM_021569887.2 mRNA upstream 367386 79292446 ~ 79297728 (-) True LOC110494643
XM_021569900.2 mRNA upstream 390140 79315200 ~ 79319147 (-) False LOC110494645
XM_036948234.1 mRNA upstream 390140 79315200 ~ 79319780 (-) False LOC110494645
XM_021569893.2 mRNA upstream 390140 79315200 ~ 79319798 (-) False LOC110494645
XM_021569899.2 mRNA upstream 390140 79315200 ~ 79319798 (-) False LOC110494645
TU1706748 other downstream 109402 78807139 ~ 78815429 (-) True G1492898
TU1706752 other downstream 110876 78803860 ~ 78813955 (-) True G1492901
TU1706762 other downstream 143436 78778352 ~ 78781395 (-) True G1492910
TU1706741 other downstream 152877 78770740 ~ 78771954 (-) True G1492897
TU1706560 other downstream 449325 78473018 ~ 78475506 (-) True G1492729
TU1707296 other upstream 423171 79348231 ~ 79349389 (-) True G1493395
TU1708035 other upstream 1146579 80071639 ~ 80087637 (-) True G1494054
TU1708910 other upstream 1672934 80597994 ~ 80598532 (-) True G1494870
TU1708974 other upstream 1767362 80692422 ~ 80694102 (-) False G1494924
TU1708975 other upstream 1767362 80692422 ~ 80694102 (-) False G1494924

Expression Profile