RNA id: TU1706148



Basic Information


Item Value
RNA id TU1706148
length 283
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G1492371
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78936347 ~ 78936629 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gttcttgacacaaaccggtgtgcctgacacctactaccatacccagttcttgacacaaaccggtgcgcctgacacctactaccatacccagttcttgacacaaaccggtgtgcctgacacctactaccatacccagttcttgacacaaaccggtgcgcctgacacctactaccatacccagttcttgacacaaaccggtgcgcctgacacctactaccatacccagttcttgacacaaaccggtgtgcctgacacctactaccatacccagttcttgacacaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1706146 lncRNA upstream 871 78935135 ~ 78935476 (+) True G1492369
TU1706065 lncRNA upstream 106761 78794009 ~ 78829586 (+) True LOC110494637
TU1706089 lncRNA upstream 125380 78779964 ~ 78810967 (+) True G1492314
TU1706091 lncRNA upstream 154749 78780486 ~ 78781598 (+) True G1492315
TU1706074 lncRNA upstream 155964 78778354 ~ 78780383 (+) True G1492300
TU1707047 lncRNA downstream 309326 79245955 ~ 79293250 (+) True G1493174
TU1707063 lncRNA downstream 353667 79290296 ~ 79291967 (+) True G1493185
TU1707064 lncRNA downstream 361916 79298545 ~ 79306714 (+) False LOC110494644
TU1707055 lncRNA downstream 376962 79313591 ~ 79314838 (+) False LOC110494644
TU1707054 lncRNA downstream 377160 79313789 ~ 79314838 (+) True LOC110494644
XM_036948224.1 mRNA upstream 3536 78923570 ~ 78932811 (+) True LOC110493265
XM_021567522.2 mRNA upstream 4632 78922674 ~ 78931715 (+) False LOC110493265
XM_036948225.1 mRNA upstream 4632 78922935 ~ 78931715 (+) False LOC110493265
XM_036948239.1 mRNA upstream 21939 78839491 ~ 78914408 (+) False LOC110494637
XM_036948231.1 mRNA downstream 16459 78953088 ~ 79190410 (+) False LOC110494640
XM_021569880.2 mRNA downstream 16459 78953088 ~ 79191687 (+) False LOC110494640
XR_005036682.1 mRNA downstream 16459 78953088 ~ 79194029 (+) False LOC110494640
XR_002469301.2 mRNA downstream 16459 78953088 ~ 79194498 (+) False LOC110494640
XR_005036683.1 mRNA downstream 16459 78953088 ~ 79194498 (+) False LOC110494640
TU1706085 other upstream 160620 78773229 ~ 78775727 (+) True G1492310
TU1706084 other upstream 162588 78770747 ~ 78773759 (+) False G1492310
TU1705741 other upstream 683039 78252629 ~ 78253308 (+) True G1492003
TU1705667 other upstream 746057 78189012 ~ 78190290 (+) False G1491963
TU1707053 other downstream 392990 79329619 ~ 79336072 (+) True LOC110493267
TU1707042 other downstream 446016 79382645 ~ 79385437 (+) False tusc2
TU1707040 other downstream 447166 79383795 ~ 79385437 (+) False tusc2
TU1707041 other downstream 447166 79383795 ~ 79385437 (+) True tusc2
TU1709446 other downstream 2356811 81293440 ~ 81293926 (+) True G1495346

Expression Profile