RNA id: TU1706979


Basic Information

Item Value
RNA id TU1706979
length 406
lncRNA type intronic
GC content 0.37
exon number 2
gene id G1493115
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79132272 ~ 79135716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGTATTAATTTCAGGATTTCCTGAATTAgaaatgaactgaactaaactaTTGTTTTGATCTGTCCCTTCTTAAGATTTTGGATTGTGACTACAGATGGTATCTAGATGCATGAAAGGGATAATTTGACCAAATGGTGTGGACCTCAAAGAAATGAGGTTCAATCCGGCCATGTACTTCTATCGAGAGACGTTAGTCTGAGCCAGCAACCGGTGTACAGCATCCAGTTGAAATAATTGTAAGAATACGTCAAAGATAAATACATAACGCAGAGACagaggacgagaggtcaaaaGGACGAGAAGTCAATAGAGTAATAACAATTAAGggaaatagtgttttttctgtaatagAGAATTATTGATCAGTGGttcagagacatgggaggaatatGTCTTCTGAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1706939 lncRNA downstream 65675 79063694 ~ 79066597 (-) True G1493079
TU1706862 lncRNA downstream 184789 78947160 ~ 78947483 (-) True G1493006
TU1706856 lncRNA downstream 195037 78936932 ~ 78937235 (-) True G1493000
TU1706855 lncRNA downstream 196362 78935691 ~ 78935910 (-) True G1492999
TU1706850 lncRNA downstream 207212 78924831 ~ 78925060 (-) True G1492994
TU1707017 lncRNA upstream 62031 79197747 ~ 79199917 (-) True G1493151
TU1707018 lncRNA upstream 64701 79200417 ~ 79200651 (-) True G1493152
TU1707223 lncRNA upstream 79568 79215284 ~ 79217147 (-) True G1493332
TU1707277 lncRNA upstream 154567 79290283 ~ 79291656 (-) True G1493382
TU1707260 lncRNA upstream 178208 79313924 ~ 79314787 (-) True G1493367
XR_005036719.1 mRNA downstream 295878 78741202 ~ 78836394 (-) False LOC110493264
XM_021569867.2 mRNA downstream 480429 78642915 ~ 78651843 (-) True LOC110494630
XM_036948232.1 mRNA downstream 624174 78484389 ~ 78508098 (-) True LOC110494625
LOC110494623 mRNA downstream 699699 78427699 ~ 78432573 (-) True LOC110494623
XM_036950728.1 mRNA downstream 742423 78217831 ~ 78389849 (-) False LOC110494620
XM_021569887.2 mRNA upstream 156730 79292446 ~ 79297728 (-) True LOC110494643
XM_021569900.2 mRNA upstream 179484 79315200 ~ 79319147 (-) False LOC110494645
XM_036948234.1 mRNA upstream 179484 79315200 ~ 79319780 (-) False LOC110494645
XM_021569893.2 mRNA upstream 179484 79315200 ~ 79319798 (-) False LOC110494645
XM_021569899.2 mRNA upstream 179484 79315200 ~ 79319798 (-) False LOC110494645
TU1706748 other downstream 316843 78807139 ~ 78815429 (-) True G1492898
TU1706752 other downstream 318317 78803860 ~ 78813955 (-) True G1492901
TU1706762 other downstream 350877 78778352 ~ 78781395 (-) True G1492910
TU1706741 other downstream 360318 78770740 ~ 78771954 (-) True G1492897
TU1706560 other downstream 656766 78473018 ~ 78475506 (-) True G1492729
TU1707296 other upstream 212515 79348231 ~ 79349389 (-) True G1493395
TU1708035 other upstream 935923 80071639 ~ 80087637 (-) True G1494054
TU1708910 other upstream 1462278 80597994 ~ 80598532 (-) True G1494870
TU1708974 other upstream 1556706 80692422 ~ 80694102 (-) False G1494924
TU1708975 other upstream 1556706 80692422 ~ 80694102 (-) False G1494924

Expression Profile