RNA id: TU1707413


Basic Information

Item Value
RNA id TU1707413
length 509
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1493488
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79517297 ~ 79517805 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaaccttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctacatctctgatcagtcttctccttgtatgagctgaaagtttagagggatggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatgtttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1707202 lncRNA upstream 134 79516782 ~ 79517163 (+) True G1493318
TU1707193 lncRNA upstream 11704 79505388 ~ 79505593 (+) True G1493309
TU1707073 lncRNA upstream 72620 79339698 ~ 79444677 (+) True G1493195
TU1707071 lncRNA upstream 173871 79338634 ~ 79343426 (+) True LOC118936427
TU1707037 lncRNA upstream 194087 79321262 ~ 79323210 (+) False LOC110493267
TU1707423 lncRNA downstream 5219 79523024 ~ 79523296 (+) True G1493498
TU1707437 lncRNA downstream 26641 79544446 ~ 79544948 (+) True G1493511
TU1707619 lncRNA downstream 282165 79799970 ~ 79801271 (+) True G1493681
TU1707636 lncRNA downstream 329430 79847235 ~ 79847725 (+) True G1493698
TU1707449 lncRNA downstream 425286 79943091 ~ 79950459 (+) True G1493517
XM_021569915.2 mRNA upstream 115412 79398640 ~ 79401885 (+) False hyal1
XM_021569916.2 mRNA upstream 115412 79398640 ~ 79401885 (+) True hyal1
XM_021569914.2 mRNA upstream 124117 79389233 ~ 79393180 (+) True LOC110494654
XM_021567434.2 mRNA upstream 129746 79383430 ~ 79387551 (+) False tusc2
XM_036948226.1 mRNA downstream 30011 79547816 ~ 79844313 (+) False LOC110493268
XM_036948227.1 mRNA downstream 30011 79547816 ~ 79844313 (+) False LOC110493268
XM_036948228.1 mRNA downstream 30011 79547816 ~ 79844313 (+) False LOC110493268
XM_036948229.1 mRNA downstream 30011 79547816 ~ 79844313 (+) True LOC110493268
XM_036948233.1 mRNA downstream 330677 79848482 ~ 79871163 (+) True LOC110494656
TU1707042 other upstream 131860 79382645 ~ 79385437 (+) False tusc2
TU1707040 other upstream 131860 79383795 ~ 79385437 (+) False tusc2
TU1707041 other upstream 131860 79383795 ~ 79385437 (+) True tusc2
TU1707053 other upstream 181225 79329619 ~ 79336072 (+) True LOC110493267
TU1706085 other upstream 741570 78773229 ~ 78775727 (+) True G1492310
TU1709446 other downstream 1775635 81293440 ~ 81293926 (+) True G1495346
TU1709462 other downstream 1819212 81337017 ~ 81338163 (+) True G1495362
TU1709526 other downstream 1914406 81432211 ~ 81602157 (+) True LOC110494696
TU1710167 other downstream 2310927 81828732 ~ 81833101 (+) False LOC110494698
TU1710572 other downstream 2645401 82163206 ~ 82169750 (+) False G1496351

Expression Profile