RNA id: TU1708321


Basic Information

Item Value
RNA id TU1708321
length 263
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G1494334
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 80321504 ~ 80321766 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttacacatgtgtaagaactgtatgaatatacttttgtccaattttgttatcataattatttttttgttaattacatgcgcataaggcatatgttttgtccatttgcaatatgatttcataggaagtcaaaagtcaaaaatgtccaaatttggtaaaaaacttcacacacccttaaaaaagtgctttctggaccgtttttcaaaattctttcaaattttgtgtcaattacacacgtataagaactgtatcaacatactttattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1708309 lncRNA upstream 8388 80312532 ~ 80313116 (+) True G1494322
TU1708303 lncRNA upstream 15435 80305694 ~ 80306069 (+) True G1494316
TU1708300 lncRNA upstream 17608 80303674 ~ 80303896 (+) True G1494313
TU1708240 lncRNA upstream 67326 80253744 ~ 80254178 (+) True G1494253
TU1708229 lncRNA upstream 76441 80244578 ~ 80245063 (+) True G1494242
TU1708322 lncRNA downstream 702 80322468 ~ 80322876 (+) True G1494335
TU1708337 lncRNA downstream 40386 80362152 ~ 80364363 (+) True G1494347
TU1708339 lncRNA downstream 43513 80365279 ~ 80365885 (+) True G1494348
TU1708364 lncRNA downstream 46664 80368430 ~ 80372190 (+) True G1494373
TU1708366 lncRNA downstream 53627 80375393 ~ 80375658 (+) True G1494375
XR_005037239.1 mRNA upstream 34506 80286945 ~ 80286998 (+) True LOC118940652
LOC110494682 mRNA upstream 274441 80038726 ~ 80047063 (+) True LOC110494682
XR_002469304.2 mRNA upstream 279753 80025090 ~ 80041751 (+) True LOC110494679
XM_021569964.2 mRNA upstream 283364 80025090 ~ 80038140 (+) False LOC110494679
XM_021570511.2 mRNA upstream 303729 80015109 ~ 80017775 (+) True LOC110495196
trnak-cuu-20 mRNA downstream 102112 80423878 ~ 80423950 (+) True trnak-cuu-20
trnak-cuu-21 mRNA downstream 103094 80424860 ~ 80424932 (+) True trnak-cuu-21
trnak-cuu-22 mRNA downstream 104075 80425841 ~ 80425913 (+) True trnak-cuu-22
trnak-cuu-23 mRNA downstream 105850 80427616 ~ 80427688 (+) True trnak-cuu-23
trnak-cuu-24 mRNA downstream 107338 80429104 ~ 80429176 (+) True trnak-cuu-24
TU1707042 other upstream 936067 79382645 ~ 79385437 (+) False tusc2
TU1707040 other upstream 936067 79383795 ~ 79385437 (+) False tusc2
TU1707041 other upstream 936067 79383795 ~ 79385437 (+) True tusc2
TU1707053 other upstream 985432 79329619 ~ 79336072 (+) True LOC110493267
TU1706085 other upstream 1545777 78773229 ~ 78775727 (+) True G1492310
TU1709446 other downstream 971674 81293440 ~ 81293926 (+) True G1495346
TU1709462 other downstream 1015251 81337017 ~ 81338163 (+) True G1495362
TU1709526 other downstream 1110445 81432211 ~ 81602157 (+) True LOC110494696
TU1710167 other downstream 1506966 81828732 ~ 81833101 (+) False LOC110494698
TU1710572 other downstream 1841440 82163206 ~ 82169750 (+) False G1496351

Expression Profile