RNA id: TU1709181


Basic Information

Item Value
RNA id TU1709181
length 518
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1495101
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81050408 ~ 81050925 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttgtacggagacttgattacacacaggtggattgtatttatcatcattagtcattttggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaattgttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtccctcttgttgttgattcttcacaaaaaaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1709179 lncRNA downstream 2022 81048166 ~ 81048386 (-) True G1495099
TU1709175 lncRNA downstream 4734 81045462 ~ 81045674 (-) True G1495095
TU1709174 lncRNA downstream 5311 81044872 ~ 81045097 (-) True G1495094
TU1709173 lncRNA downstream 5843 81044267 ~ 81044565 (-) True G1495093
TU1709141 lncRNA downstream 9989 81039766 ~ 81040419 (-) True G1495062
TU1709190 lncRNA upstream 12086 81063011 ~ 81063237 (-) True G1495110
TU1709199 lncRNA upstream 17585 81068510 ~ 81068846 (-) True G1495114
TU1709310 lncRNA upstream 64942 81115867 ~ 81116748 (-) False LOC110494690
TU1709311 lncRNA upstream 65115 81116040 ~ 81116748 (-) True LOC110494690
TU1709324 lncRNA upstream 83193 81134118 ~ 81134373 (-) True G1495229
XM_021569971.2 mRNA downstream 161577 80887457 ~ 80888831 (-) True LOC100135925
XM_021569965.2 mRNA downstream 165542 80882453 ~ 80884866 (-) False LOC110494680
XM_021569943.2 mRNA downstream 168164 80868129 ~ 80882244 (-) True LOC110494672
XM_021569954.2 mRNA downstream 208207 80783735 ~ 80842201 (-) False LOC110494674
XM_036950747.1 mRNA upstream 39572 81090497 ~ 81095596 (-) False LOC110494689
XM_021569980.2 mRNA upstream 39572 81090497 ~ 81103942 (-) False LOC110494689
XM_021569981.2 mRNA upstream 39572 81090497 ~ 81103942 (-) False LOC110494689
XM_021569982.2 mRNA upstream 65534 81116459 ~ 81238629 (-) False LOC110494690
XM_021569984.2 mRNA upstream 65534 81116459 ~ 81238629 (-) False LOC110494690
TU1709066 other downstream 154971 80895088 ~ 80895437 (-) True G1495003
TU1708974 other downstream 356306 80692422 ~ 80694102 (-) False G1494924
TU1708975 other downstream 356306 80692422 ~ 80694102 (-) False G1494924
TU1708977 other downstream 356306 80692422 ~ 80694102 (-) True G1494924
TU1708910 other downstream 451876 80597994 ~ 80598532 (-) True G1494870
TU1709196 other upstream 15046 81065971 ~ 81066682 (-) True G1495113
TU1709210 other upstream 42594 81093519 ~ 81103914 (-) True LOC110494689
TU1709315 other upstream 59520 81110445 ~ 81115238 (-) True G1495222
TU1709656 other upstream 260822 81311747 ~ 81314315 (-) True G1495538
TU1709673 other upstream 275760 81326685 ~ 81327113 (-) True G1495552

Expression Profile