RNA id: TU1709337



Basic Information


Item Value
RNA id TU1709337
length 211
lncRNA type intronic
GC content 0.35
exon number 1
gene id G1495242
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81152885 ~ 81153095 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTAAAGACCTGTCTGATTaagatgaataatatctgacaataccgTTTTAATTGTATGCTCCAAGCATTTAGCTAGAATGTTTGCATCACAAGAGGCCTCCAATTTTttttaatggactggatctttatatataccacttggatcctgtttcagtaataatgaaatcagacatTCTTGTTGCGTGTCCGATAATCTACcgtttatataggag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1709334 lncRNA downstream 1232 81151442 ~ 81151653 (-) True G1495239
TU1709324 lncRNA downstream 18512 81134118 ~ 81134373 (-) True G1495229
TU1709310 lncRNA downstream 36137 81115867 ~ 81116748 (-) False LOC110494690
TU1709311 lncRNA downstream 36137 81116040 ~ 81116748 (-) True LOC110494690
TU1709199 lncRNA downstream 84039 81068510 ~ 81068846 (-) True G1495114
TU1709365 lncRNA upstream 47224 81200319 ~ 81200518 (-) True G1495269
TU1709370 lncRNA upstream 53589 81206684 ~ 81206999 (-) True G1495274
TU1709646 lncRNA upstream 141563 81294658 ~ 81294871 (-) True G1495528
TU1709647 lncRNA upstream 142529 81295624 ~ 81295830 (-) True G1495529
TU1709651 lncRNA upstream 150308 81303403 ~ 81303845 (-) True G1495533
XM_021569980.2 mRNA downstream 48943 81090497 ~ 81103942 (-) False LOC110494689
XM_021569981.2 mRNA downstream 48943 81090497 ~ 81103942 (-) False LOC110494689
XM_036950747.1 mRNA downstream 57289 81090497 ~ 81095596 (-) False LOC110494689
XM_021569971.2 mRNA downstream 264054 80887457 ~ 80888831 (-) True LOC100135925
XM_021569965.2 mRNA downstream 268019 80882453 ~ 80884866 (-) False LOC110494680
XM_036950748.1 mRNA upstream 189102 81342197 ~ 81374548 (-) True LOC110494693
XM_036950749.1 mRNA upstream 242975 81396070 ~ 81420329 (-) False LOC110494695
XM_036950750.1 mRNA upstream 242975 81396070 ~ 81420330 (-) False LOC110494695
XM_036950751.1 mRNA upstream 242975 81396070 ~ 81420330 (-) True LOC110494695
XM_036948436.1 mRNA upstream 328187 81481282 ~ 81488954 (-) True LOC118940159
TU1709315 other downstream 37647 81110445 ~ 81115238 (-) True G1495222
TU1709210 other downstream 48971 81093519 ~ 81103914 (-) True LOC110494689
TU1709196 other downstream 86203 81065971 ~ 81066682 (-) True G1495113
TU1709066 other downstream 257448 80895088 ~ 80895437 (-) True G1495003
TU1708977 other downstream 458783 80692422 ~ 80694102 (-) True G1494924
TU1709656 other upstream 158652 81311747 ~ 81314315 (-) True G1495538
TU1709673 other upstream 173590 81326685 ~ 81327113 (-) True G1495552
TU1710622 other upstream 1019374 82172469 ~ 82174852 (-) False G1496390
TU1710627 other upstream 1019374 82172469 ~ 82174852 (-) True G1496390
TU1710947 other upstream 1082033 82235128 ~ 82240264 (-) False G1496689

Expression Profile