RNA id: TU1709781


Basic Information

Item Value
RNA id TU1709781
length 1076
lncRNA type intronic
GC content 0.39
exon number 2
gene id G1495648
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81511619 ~ 81513142 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTTCATCCCTCTTAGAGGAATGACAGAATCTTGATGCTATTTCCCCTTTAGCAAGCACTTTTTTCCCACAGTGAAGCCCTACATTGAGTCTTAAATAGGTTAAACTTGAAAGCATTCAAGATTTTGCAAAAACTTTTCAAACTGACATAGCATCTTCAGAGTAAAACTATATTCATGTGATAAAGAGCGTCTTAAATCATCCCACAGCACCCCCTCTCGCACCGTGAACCAACCCAACCACCAAAAAATGTAGAAATAAAGCCTTTCATGAACGAACACTTGCACTTTTAGCGGTTATCATGAGAATCTCAGTGTttcaaaagaaagaaaaaaaacaaccaaTACATaacatgagtagcctagctatagttagctacagtaggtcaaccaatacataacatgagtagcctagctatagttagctacagtaggtcaaccaatacataacatgagtagcctagctatagttagctacagtaggtcaaccaatacataacatgagtagcctagctatagttagctacagtaggtcaaccaatacataacatgagtagcctagctatagttagctacactaggtcaaccaatacatcatcatgcgtagcctagctatagttagctacagtaggtcaaccaatacatcatcatgagtagcctagctatagttagctacagtaggtcaaccaatacatcatcatgagtagcctagctatagttagctacagtaggtcaaccaatacatcatcatgagtagcctagctatagctagctacagtaggtcaaccaatacatcatcatgagtagcctagctatagttagctacagtagatcaaccaatacatcatcatgagtagcctagctatagttagctacagtaggtcaaccaatacatcatcatgagtagcctagctatagttagctacagtaggtcaaccaatacatcatcatgagtagcctagctatagttagctacactaggtcaaccaatacatcatcatgagtagcctagctatagttagctacactaggtcaaccaatacatcatcatgagtagcctagctatagttagctaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1709760 lncRNA downstream 17115 81493687 ~ 81494504 (-) False G1495634
TU1709764 lncRNA downstream 17115 81493687 ~ 81494504 (-) True G1495634
TU1709734 lncRNA downstream 60402 81450527 ~ 81451217 (-) True G1495609
TU1709715 lncRNA downstream 84943 81426454 ~ 81426676 (-) True G1495592
TU1709714 lncRNA downstream 88121 81423250 ~ 81423498 (-) True G1495591
TU1709837 lncRNA upstream 89166 81602308 ~ 81602511 (-) True G1495688
TU1709870 lncRNA upstream 100100 81613242 ~ 81613463 (-) True G1495721
TU1709878 lncRNA upstream 103664 81616806 ~ 81617093 (-) True G1495726
TU1709886 lncRNA upstream 108933 81622075 ~ 81622289 (-) True G1495734
TU1710055 lncRNA upstream 145237 81658379 ~ 81698027 (-) True G1495889
XM_036948436.1 mRNA downstream 22665 81481282 ~ 81488954 (-) True LOC118940159
XM_036950750.1 mRNA downstream 91289 81396070 ~ 81420330 (-) False LOC110494695
XM_036950751.1 mRNA downstream 91289 81396070 ~ 81420330 (-) True LOC110494695
XM_036950749.1 mRNA downstream 91290 81396070 ~ 81420329 (-) False LOC110494695
XM_036950748.1 mRNA downstream 137071 81342197 ~ 81374548 (-) True LOC110494693
XM_021569991.2 mRNA upstream 357932 81871074 ~ 81887569 (-) True LOC110494699
XM_021569995.2 mRNA upstream 400405 81913547 ~ 81926173 (-) True LOC110494702
XM_036950752.1 mRNA upstream 423687 81936829 ~ 81973979 (-) True LOC118940497
XM_036948437.1 mRNA upstream 473770 81986912 ~ 81988396 (-) True LOC118940160
XM_021570003.2 mRNA upstream 642891 82156033 ~ 82159964 (-) False LOC110494709
TU1709673 other downstream 184506 81326685 ~ 81327113 (-) True G1495552
TU1709656 other downstream 197304 81311747 ~ 81314315 (-) True G1495538
TU1709315 other downstream 396381 81110445 ~ 81115238 (-) True G1495222
TU1709210 other downstream 407705 81093519 ~ 81103914 (-) True LOC110494689
TU1709196 other downstream 444937 81065971 ~ 81066682 (-) True G1495113
TU1710622 other upstream 659327 82172469 ~ 82174852 (-) False G1496390
TU1710627 other upstream 659327 82172469 ~ 82174852 (-) True G1496390
TU1710947 other upstream 721986 82235128 ~ 82240264 (-) False G1496689
TU1710950 other upstream 721986 82235128 ~ 82245987 (-) False G1496689
TU1711213 other upstream 1141330 82654472 ~ 82661638 (-) True G1496921

Expression Profile