RNA id: TU1710177



Basic Information


Item Value
RNA id TU1710177
length 282
lncRNA type intronic
GC content 0.37
exon number 1
gene id G1496006
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81841749 ~ 81842030 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAattaatatatttcagtctaagATTATAACAAAGTGGAGCTATTGTGAATGTAGCCTCCAAAGCTTCCAGTGGGGAAGGTGATAGGGTATGTAGAAGTAGAACATTGACTAGAAAAACTATGAGTAGGCTATGTTTACCAAGTCATATCAGTAGACAAACTGTCTATTTCAACAACAGTGGGAGGCTGAGTGGGACAAAGGTAGTTTCCCTCTCAATGTGAAGCTCTCATCTTTCAAAATGAAGGGATATTATTTACTATTACATGGGAACTATGGTACAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1710173 lncRNA upstream 3461 81838071 ~ 81838288 (+) True G1496002
TU1710172 lncRNA upstream 4857 81836615 ~ 81836892 (+) True G1496001
TU1709872 lncRNA upstream 227114 81614344 ~ 81614635 (+) True G1495723
TU1709871 lncRNA upstream 227895 81613552 ~ 81613854 (+) True G1495722
TU1709861 lncRNA upstream 233460 81608029 ~ 81608289 (+) True G1495712
TU1710166 lncRNA downstream 2718 81844748 ~ 81847533 (+) True LOC110494698
TU1710181 lncRNA downstream 7550 81849580 ~ 81849895 (+) True G1496010
TU1710198 lncRNA downstream 24414 81866444 ~ 81867444 (+) True G1496024
TU1710200 lncRNA downstream 27384 81869414 ~ 81873116 (+) True G1496026
TU1710201 lncRNA downstream 31631 81873661 ~ 81878079 (+) False G1496027
XM_021569989.2 mRNA upstream 239588 81432188 ~ 81602161 (+) False LOC110494696
XR_005036710.1 mRNA upstream 448149 81392702 ~ 81393600 (+) True LOC118940108
XM_021569988.2 mRNA upstream 460962 81374533 ~ 81380787 (+) True LOC110494694
XM_021569986.2 mRNA upstream 506650 81323567 ~ 81335099 (+) True LOC110494692
XM_021569985.2 mRNA upstream 528489 81284086 ~ 81313260 (+) True LOC110494691
XR_005036711.1 mRNA downstream 19521 81861551 ~ 81862479 (+) True LOC118940109
XM_021569992.2 mRNA downstream 48527 81890557 ~ 81892633 (+) True LOC110494700
XM_021569994.2 mRNA downstream 62738 81904768 ~ 81911784 (+) True LOC110494701
XR_002469402.2 mRNA downstream 84621 81926651 ~ 81927921 (+) True LOC110495197
XM_036948438.1 mRNA downstream 182037 82024067 ~ 82026625 (+) True LOC118940161
TU1710167 other upstream 8648 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 239592 81432211 ~ 81602157 (+) True LOC110494696
TU1709462 other upstream 503586 81337017 ~ 81338163 (+) True G1495362
TU1709446 other upstream 547823 81293440 ~ 81293926 (+) True G1495346
TU1707041 other upstream 2456312 79383795 ~ 79385437 (+) True tusc2
TU1710572 other downstream 321176 82163206 ~ 82169750 (+) False G1496351
TU1712329 other downstream 1772235 83614265 ~ 83634495 (+) True G1497918
TU1712638 other downstream 2037902 83879932 ~ 83881188 (+) True LOC110494749
TU1713169 other downstream 2283807 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 2653899 84495929 ~ 84497398 (+) True G1498913

Expression Profile