RNA id: TU1710244


Basic Information

Item Value
RNA id TU1710244
length 3471
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G1496064
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81844065 ~ 81847535 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggggatattttattttatatttaggCCAAAGTAAATAACTCTTAATGAACACAACATCccatttcagttttattttttgTGGAAAGAAAAAAAGACAATCATTGAAATATCACAAAACTATTCACATCATGGTCATCATCCATGTATGACACACATGATTAAAAGTGTCTTCGCGTGTTGACGTCAAAGTGCCTCCCTTCAAGTCGGTAATGTCTAGATTGGACCCAgcttttgaaaaatgtatgttaaaaGTAGACACTTTTTTGTGCATTTTAgataaccctaaccattttccTAATTTTAACCTAATTcccctaacctgctgcgtaattTCTCCTAGCCCTGATATGAAAAGTCAATTCTGACAAAAAGCTGGATCCCTTCAAGACCCTCCAAGTGCCCTTGAACATATGAAAATGATGAAGATGGCCAAAGATTGTCTGTTCCCTCATGGACAATCAATGCCTATCAACTTTCATTGGATCAAACGCTTGTTTTCTGCATTCACAATTATGACTTTAGTCTCATCAAGTAGGCGACATTAGTGCAACCTCAAGGTAGTTATGTCTGGAATATTTTTTAAGTTACTTAAAATTAAATCAATCAGTAACAGTGATATACAGTGTCATTTTCCAATATAACGTGCAAACAATTTCCTCCGAGATGAGGATAAACTTTCAGGAGCTCAAGAGTCATTAACGTAAGACTAAATACTGCCACCTAGAGGAGATAAATAGCTAATGGGTTAAGGCAAGAAATGTAGTAGCTGGATATTCCAATCATCCACAGGAACCGCACCCGACAGCTATCTGCAGGAGTCTTCCCCGCTAGCTGTGTTCCGGCGTCCTAGCTAGTAAGCTAACAAGCTAGCACACAGTGTCCTTCATTCCCACCTGCTAAACACCTGCCCTTGCTATTATTACCAGAACTGCGGGAAACTAGTGCATGACAGGCATGGGCGAAGTACACTGTCTACCGGTGTCCTAGCTATCGTTAACTAGCAACCTTTCTTCTGCTGCTGTGTACCGGAgtcctagctaactagctagctatcacACAGTGTTTTTTGCTCCGGCTTGCCGAACACCTGCTGGAatcctagctagctaactagttagcaCCCAGTGTCCTAAACACCTGCCGAAAACCTGCCCTTGCTGTCGTTAACAGTACTTCGGAAAAAAGTGCCCGACAGGCAGGGGAAAGTACACTGTGTACcggtgtgctagctagctacctatccCACCTACTGTGTACCGGAGTCCTAGCCTACTAACTGGCTAGCTATTACCCAGTGTCCTAAATGCCTGCCGAACAACTGCCCTCGACCTTGTTAACAGAACAGCGGGAAACTAATGCCCAACAGGCTTGGGGCGAAGGACACTGTCTAACATTACTAGCTAACTAGTTGACGTTGTCCCCCTGCCTCTTCGGCATGCATAACTACCACATACTGTACTGGAGTGCCCCCGCCTCCTGCCTGGCGGACCGGAGTCCTAGCAAAAAAAAAGACACATTTACACATAAAGAGTGGTTCCTACAGATGCAGAaatgcccacatgcaggaacgcCCCCAATTGCACCCTTCATAGTTCAAGAGTGTTGTATTGTCTTTGGTGTTGTCACAGATactgcattcaaaacaactggaaactcggaaatctccgacttcagtgcagtcaagacaactgggaaatggGAAAAAAATTAGCTCAGactgggattttttttgtttgaatggtcatccaacttggGAAAActtttattgggggggggggtacttctGGAAATGCTTGCGTAACAGACCAAGAAGACCAGGCCCGGAATGAGATGTCAGTGATAGAAGTGCAAAATTCTGTAAATGTTCTcaaaatctaaaggcacaacctagattcgagccaatgGCTAAAGTAGTTAATAttccaacctcgtgaaagtgacaaactgacacgtacatatttttttgtaaaaaacaAATTTATATTGAATTAGTGCCATTGATTTTAGGGCCTACACATTCCCATTTTGGCGCAAGACAACCGTTAGACCCGATGATGTGTTTCTATTCATGAGTTTAGCTAGCTAAAAATGTGGTCATCACTAGTTACCAGAGGCATATAGTGATAAATATGGCTAAACCCAGGCTTTTTCTGCAATTTCTATTTTTTTAATCTGAttataaacctaaccttaacccaaaccttaaccaaaACTTAAACTTAAATGAATACCAAAAAGCCCATTTTTGTTTACATAATTGTAACGATATAGCCAGGgccgcaactttcactggggacgagggggacatgtccccccccaCATTTAGAAATTGCATTTTTTTCCCTCCCTAATTTTATCATTTGAATATGATACAAAACGAGgtaacggtgtgctttaggaccatgcggaagCCTCCGAGCggttgggtaggctgtttggagtgtttatccgactggattcAAAAACTAACAATGGTAATGTCcacccccacttctaaaaccaaagttgcgcccctggatATGGCCAATTTTTGTAAATAGTGACAAGTGTGATCGGGGAATCATATTGCAGAAGCAGTTTCTGCAAGTCTTCAAACTGGATGTTGGTGTTGTTATCGGTCTCTCTAGCTTTTAGCTGTGCAGTCAACACGGGAATATAATTGTTTTGAAGATGAATTGAAGAACTGTGAATATCAAGAAACTATGCCTGATTATTCATGTAACAATGCTTTCGGAGATTAAAGAAACCTACCAATCATCATGACAGTGTGAACAAAATGTTACAGTGATTCATTAAACCTTCTAAAAGCACTAGTGCTTTCACAGAATAATACTGTACATTGTAGTTATTTGAGGTGGACTTCTGAAATTCCAAATACACTATACACATAGGAATTACCTGTATATAATAATATTCTAAAATATATCACAACACTTATGCAGAAAATGTACTATTTGGACTCCAGTAAAATATAGTATTTTTTGGTAGGGCAGTTGTACATTTCAGTAAAAAGTTGCATACATACGTGTATCTTGACACAGTCATATTATGCTGATAATACATTATTCATTGACAGAAGTGGAACTGGTGAAGAAATATGTTTACATGAACATTGCTATCTGCCAAAGACTTAAACCAAATTAATTTGAGGTCTACATTATCTCATTGACTGTATTGAGGTACCATGTGAATGCGTGAATTTGATGTCAAGGAAAGTTAGATTATGTCTTCTGCAGTTTTTGTCTCGTCAACTGCTCTCACCCTGTCATTGGTGGCTTCTTTGGAAGCATTGTCCTTGTTGGACTCTTCTTCTTTTCCCTCCAGTTTagccttcctttcctcctcctttttctcttTGTCCAACAACCGGTAGTTGGTACCCATCCCCACGAACAGGAACACACTGGCAATGATAAGGATCACCCCACAGCTCTGGTAGGTGTATTGGTAGTCATTGTAGATGTCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1710246 lncRNA downstream 157 81843128 ~ 81843908 (-) True G1496066
TU1710239 lncRNA downstream 5330 81838346 ~ 81838735 (-) True G1496059
TU1710236 lncRNA downstream 9464 81834221 ~ 81834601 (-) True G1496056
TU1710161 lncRNA downstream 20281 81823478 ~ 81823784 (-) True G1495990
TU1710055 lncRNA downstream 146038 81658379 ~ 81698027 (-) True G1495889
TU1710250 lncRNA upstream 3082 81850617 ~ 81850887 (-) True G1496070
TU1710267 lncRNA upstream 48919 81896454 ~ 81896677 (-) True G1496087
TU1710485 lncRNA upstream 174871 82022406 ~ 82063840 (-) False G1496284
TU1710489 lncRNA upstream 174871 82022406 ~ 82063840 (-) False G1496284
TU1710486 lncRNA upstream 174919 82022454 ~ 82063840 (-) False G1496284
XM_036948436.1 mRNA downstream 355111 81481282 ~ 81488954 (-) True LOC118940159
XM_036950750.1 mRNA downstream 423735 81396070 ~ 81420330 (-) False LOC110494695
XM_036950751.1 mRNA downstream 423735 81396070 ~ 81420330 (-) True LOC110494695
XM_036950749.1 mRNA downstream 423736 81396070 ~ 81420329 (-) False LOC110494695
XM_036950748.1 mRNA downstream 469517 81342197 ~ 81374548 (-) True LOC110494693
XM_021569991.2 mRNA upstream 23539 81871074 ~ 81887569 (-) True LOC110494699
XM_021569995.2 mRNA upstream 66012 81913547 ~ 81926173 (-) True LOC110494702
XM_036950752.1 mRNA upstream 89294 81936829 ~ 81973979 (-) True LOC118940497
XM_036948437.1 mRNA upstream 139377 81986912 ~ 81988396 (-) True LOC118940160
XM_021570003.2 mRNA upstream 308498 82156033 ~ 82159964 (-) False LOC110494709
TU1709673 other downstream 516952 81326685 ~ 81327113 (-) True G1495552
TU1709656 other downstream 529750 81311747 ~ 81314315 (-) True G1495538
TU1709315 other downstream 728827 81110445 ~ 81115238 (-) True G1495222
TU1709210 other downstream 740151 81093519 ~ 81103914 (-) True LOC110494689
TU1709196 other downstream 777383 81065971 ~ 81066682 (-) True G1495113
TU1710622 other upstream 324934 82172469 ~ 82174852 (-) False G1496390
TU1710627 other upstream 324934 82172469 ~ 82174852 (-) True G1496390
TU1710947 other upstream 387593 82235128 ~ 82240264 (-) False G1496689
TU1710950 other upstream 387593 82235128 ~ 82245987 (-) False G1496689
TU1711213 other upstream 806937 82654472 ~ 82661638 (-) True G1496921

Expression Profile