RNA id: TU1710202


Basic Information

Item Value
RNA id TU1710202
length 3787
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G1496027
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 81873661 ~ 81878079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATAGcgcttaccaccaagcccacgaTCACAGTCACCAAAGTGCCCAGAAGACAGAAGTACAAGTAGGACAGGGAGTACCAAGAGTCTGCCAGAGCTGGACGGTCACTGTAACAATAAGATGAAGAGTCATACCTGAGCCCACACTAACACAGTAGCCTTGCGCTAACACATTAGCtttgttaaatcaaataaaatcttatttgtcacttacacgtttagcagatgttattgcgggtatagcaaaatgcttgtgtttctagctcaagGACtaaataaatattaggatgagcaatgtcagagtggcaaaGACTAAAAtgcagtagaatagagtatacagtatatagatatgagatgagtaaagcaaaaatatgtaaacattattagagtgactagtgttccattattaaagaggccagtgatttcaagtctatgtatataggacaGCAgcgtctaaggtgcagggttacgtaACCGGGTGGAAGACGCCTAGTGATGGCtaatttaacagtctgatggctttgagatagaagctgattttcagtctctcggtcccagctttgatgcacctttactGACCTCGACTTCTGGATGAGAGCAGGGTTAACAGGCAgcggcttgggtggttgttgtccttgattatctttttggccttcctgtgacatcgggtgctgtaggtataCTGGAGGGTAGGTAGTTGATAGGTAGTTAGTAGTCCACGGTGATGCATTGGGAAGACCGCACCCCCCTCTGGAGAGTCCTGCGGTTTcaggtggtgcagttgccataccaggcggtgatacagccgaacaggatgctctcaattgtgtatctgtaaaagtttgtgagggttttaagtGCCATGCAaaatgtcttcagcctcctgaggatgaagaggcactgttgtgccttcttcaccacactgtctgtgtgggtggaccatttcagatcgtcagtgatgtgtacgccgagggaCTTGAAGCTTTTCACTTGCTCCACTGCAGTCCTGTTGATTTTGATAGGGGCGTGgctccctctgctttttcctgaagtccatgatcagctcctttgttttgtcaaccttgagtgagaggttattttcctggtaatcaggcctactatggttgtgtcgtctgcaaacttgatgattgtggccacacagtcatgggtgaacagggaatacaggaggatGCTGTGCACGCACCCGTGTGGGGCCCCTGTGTAGAGGATCAGCGAAGAGGTGtcgtttcctaccttcaccacctgtgggcggcccatcaggaagtccaggacccagttgcagagtgtggggttcagacccagggccccaagcttaatgatgagcttggagggtactatggtgttgaatgctgagatatagtcaatgaacagcattctttcataggtatttctcttgtccagatgggatagggcagtgtgcagtgcaatggcgattgcatcatctgtggatctattggggtgataagcaaattgaagtgggtctacggtgtcaggtaaggtagaggtgatatgatccttaactagcctctcaaagcacttcatgatgagagaagtgagtgctacggggagaaagtcatttatttcagttaccttagcttttttgggaacaggaacaatggtggacatcttgaagcaagtggggacagcagactgggatagggagagattgaatatgtcctcaAACACTCAAGCCAGCTGGTCTAGGCTGGCAGCCTTGCAAAGGCTAACGCATAAATCTCTTACTCActtcggccacagagaaggagagcccacagtccttgataGCAgtccgtgtcggtggcactgtgttatcctcaaagcgggcgaagaaggtgtttagcttgtccggaagcaagacatcggtgtctgtgacgtggctggttttccctttgtagtctgtggttgtctgtagaccctgccacactCGTCTCATGTCTGAGCGCTTTCAGTTTAACTGCCATCTATGCACGGTTAATGTAGGTtgtaatagtcacagtgggtacaacatctcctatttACTTCCTGATAAACTAAGTCACCATATCAGtatattcgtcaatgttattctcagaggctacccggaacatatcccagtccaggtgatcaaagcaatcttgaaacGTGGATTCCGATTTGTCAGACCAGTATTGAATAATCCTTAGCACggatacttcctgtttgagtttctgctgataggaagggaggagaaaaatggagtcatggtcagaattgcagaagggagggcaggggaggtcttgtaggcatcccggaagttgtAATAGCAGTGGCCGAGTGTTTTATCagagcgagtactacagtcaatgtgttgatagaacttcggtagtgttttcctcaaatttgctttgttaaaatccccagctacaataaatgcggcctcaggttatgtggtttccagtttgcttaaagtccagtgtagttctttgagggccgtcgtggtatcagcttgagggggaatatacacggctgtgactataactgaagagaattctcttgggaggtaatacggtcggcatttgattgtgaggtatccTAGGTTGGGTGAAcgaaaggacttgagtttctgtatgttatcacaatcacaccattagtggttaatcatgaaacatacaccccagcctttcttcttcccggagagttctttaatCCTGTCGATGCTatatactgagaacccagctaGCTGAGAACCCTGagctcgtctaatttattgtccagagactgaacattagcgaatAATATACTTGGATGCGGTGGATGGTGtgcgcctcctgagtcggactagaagtccactccgaatacctcttctcgtCCAGCCTCTGGAATCCAATTCGGTAAAGTCGTATTCCCGGTcgaaatgctggtgagttaccgccactCTGATATTAAAAAGTTATTTCTgggtgtatgtaataacacaaaacatttcctggaataataatgtaagaaataactaacaaaaaaatgtatactaCAAAGTTGCTTTGTAGCTAGAAGTAAAGCTGCCctatctgtcggcgccatcttgtgaAACCAGACTGACCGCTgcatttgtcacgccctgaccttagagagcctttttatgtcagggtgtgatttgggtgggcattctatgtgttgtatttatttgtgtttggccgagtgtggttcccaatcagacagctgtctatcgttgtctctgattgggaatcatacttaggtagcctttttctcCACCTATGTTATAGGATCTTGTTCTTGTATTGTTGCTGTTGAGCCCTATAAGGCTGTACGTTTCGTTGGTTCTCTCTTTCTTGTTTTTCCTGGTTATCATTAAAGAATATGAGTAACCTACCTCATGCTGCATCTTCGGCTAATTCCACCAACAACGATCATCACAGCATTGACGTTTTCATTCAGTGAAACAGAATGTGAGCTCACAAGATCAGCCTGTTTCAACAAGGCTGCTAACCCATAGTTAGCTATAAGCAACATAGGACTCTGGAATAAAATTGTGCACTATATGTGGAATAGGGTGACTTTGAAGACAGTGATTATAGAGTGACCGTGAGTAACTCACTCAGGCAGAGGGGTCATTGTTACTGCACTGGTCCATGGGGCCAGGGTGGTGTAGTTCAGGTCCTGTGTGCGGTTACAGCCTGCCACACTGATTGGCAGGGGGTTGGTTTTATCAGCTAAGGGTGGGTATATCTGAGCTCCAATCCCCACCCACAGGGTAATAACAAGGCCCATAATCAGCCCTGTGAGTCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1710200 lncRNA upstream 545 81869414 ~ 81873116 (+) True G1496026
TU1710198 lncRNA upstream 6217 81866444 ~ 81867444 (+) True G1496024
TU1710181 lncRNA upstream 23766 81849580 ~ 81849895 (+) True G1496010
TU1710166 lncRNA upstream 26128 81844748 ~ 81847533 (+) True LOC110494698
TU1710177 lncRNA upstream 31631 81841749 ~ 81842030 (+) True G1496006
TU1710206 lncRNA downstream 6204 81884283 ~ 81887740 (+) True G1496030
TU1710207 lncRNA downstream 9960 81888039 ~ 81888262 (+) True G1496031
TU1710217 lncRNA downstream 22105 81900184 ~ 81900390 (+) True G1496040
TU1710219 lncRNA downstream 23834 81901913 ~ 81902124 (+) True G1496042
TU1710425 lncRNA downstream 163391 82041470 ~ 82063843 (+) False LOC110494705
XR_005036711.1 mRNA upstream 11182 81861551 ~ 81862479 (+) True LOC118940109
XM_021569990.2 mRNA upstream 26121 81828571 ~ 81847540 (+) False LOC110494698
XM_021569989.2 mRNA upstream 271500 81432188 ~ 81602161 (+) False LOC110494696
XR_005036710.1 mRNA upstream 480061 81392702 ~ 81393600 (+) True LOC118940108
XM_021569988.2 mRNA upstream 492874 81374533 ~ 81380787 (+) True LOC110494694
XM_021569992.2 mRNA downstream 12478 81890557 ~ 81892633 (+) True LOC110494700
XM_021569994.2 mRNA downstream 26689 81904768 ~ 81911784 (+) True LOC110494701
XR_002469402.2 mRNA downstream 48572 81926651 ~ 81927921 (+) True LOC110495197
XM_036948438.1 mRNA downstream 145988 82024067 ~ 82026625 (+) True LOC118940161
XM_021569996.2 mRNA downstream 159494 82037573 ~ 82047285 (+) True LOC110494703
TU1710167 other upstream 40560 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 271504 81432211 ~ 81602157 (+) True LOC110494696
TU1709462 other upstream 535498 81337017 ~ 81338163 (+) True G1495362
TU1709446 other upstream 579735 81293440 ~ 81293926 (+) True G1495346
TU1707041 other upstream 2488224 79383795 ~ 79385437 (+) True tusc2
TU1710572 other downstream 285127 82163206 ~ 82169750 (+) False G1496351
TU1712329 other downstream 1736186 83614265 ~ 83634495 (+) True G1497918
TU1712638 other downstream 2001853 83879932 ~ 83881188 (+) True LOC110494749
TU1713169 other downstream 2247758 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 2617850 84495929 ~ 84497398 (+) True G1498913

Expression Profile