RNA id: TU1710627


Basic Information

Item Value
RNA id TU1710627
length 2316
RNA type TUCP
GC content 0.38
exon number 3
gene id G1496390
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 82172469 ~ 82174852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCACTTTATTCCCTTCAGCCAGTCTAACACAGGGAGAAAACCAGACAGAATAACACACAGGAGACATCAAGACTGTTTCTCGTCGATTCAGAAAACAGAGACAACAACAGGAGGAGGAGTTGACAATGGACGCTAAGTTACCAGAGATCCAAGAGTGCTAATCGACAGACTGGATACCAATTTTCACGAGGGACACACAAGCAGCATGGATGCTCTAAAACTATAATCACCACTCTCTGCATTTCTCTCCATCTCAAATTATTTGTTAGTTTTGTGAACGTTGAAATCCTGAACTAGAGGGTTTAGGGTGAAGGGATATATAGAATCGCCCAATAGAGGAAGTCTTGAAGAGATGGCACAAGGAGACGGAGTTACTGAGCATGAGAGGGAGACGGCTGAGGAGGAGGATGCCTTGCTACACTTTAGCCGCTATGCCGAGGCCCGCCAAGCCCTGCCCTGGGACCAGAAGACCCGCAGGGAGAAGATTACCTACTACACTGACCGCTGCTTTCTCATCTTCGTCATCATCTTCCTGTCTGTGCTGTTTGGGGAGGCTATGTACAAAGCATGGTGGGTGTCAAACGGGCATAAGATTAAGGCGTTTTTGTTCAATTTTGCCACATATCTGTTCGCccaggaggaaggggaggacatgATTGAACTGTAGGCCTATAGGACAGTATGACATTGACAGATATGCCgaacacatcctcatgatcaccTGAGGATCACCACACCTGAAATGATTACCTGTCAGTCAGTAGGCTATTTAGTTTTGACAcaaatattttgtttttatttgttaCTGAATGTGTGCAAGGAAATCAACTAGATATAATCAGAACCATTGTCTAAACTCCAAAATGGTTAATTATTCAATAAAGTAAACTGTCTACATGAATAATTAGGTGTGCTTGCTCATACTTCCCACaagacacacactggttgaatcaatgttgtttccacatcatttcaacaaaatgtattattattccgTTACCACCTGTAGCACCAAAACCATCAAATCTACCAACACCAAAACAACttgcttgaaaaaaaaaaacgttttgaaaCTACTAATACTTTTCACACTACAAAAGTACTTGCACAAATCACAATGCATTACAATGGTCATAATATGACATGGTAAAAGTTTGGACCATAAGTAGTTTTCAACCGTTATGGCTAGAAACGCCATTCAAACTTTAAAATGTGCTGACCGGACTGGCACAATAGGGTGATTGTATTCAGCTTTTTGATACCATTTATACTTTTTCAACTATAACCAATTGACATTTGCATAAGGctcaaattctctctctctctctcaaaccttGGGTCACATGCTCTCCCACAACAAACAGAAGGATTGTAAACTGCTGAGTGTGTGGATTAGAGCGTTTTACACTACCATAGATTCTCAAAAGCAAGGAGTTCAAATCACTCAAATTAGCCTATCCCTAACCTGAATCGCAAATTCCAAAGGATAATTTAATTTCATCATGGCTTGAATTATTGCTGGACGAAATGTGTTGTTGCTGCATATCATGTTCATTTAAAAACAATCCTGAAAAAATGGAAAGATCCTTGAACCAATATGATGATAATGTATTCATAAATACCCGACACTTAATTTGTCAGGAGCATCTCGTCCGAGCTGATTTTTTTTCTTGGGCGAGAGGTGATTGTGAACAAATAATATACATTTGGCCAGCAAGCAGCTGATCGAACTCCCCAGTGAATTACCTATGTTTTCAGTCACAATTTCCTTTTACCACATGTAATGATCTGCATGATATTGATAAAAATGAAGCTTGGTTTGTTCTTAACTTTGATAAGCTAATGTTGTAAGGTAGGACTACTGCACTTTTATAATTCGTATGAGAGgggtatttgttatttttatatatatatatataggctaaCGTTACTTGATGAAACATGTTCATAGCTAGCTACCCACTGGGAAAAAAATGATTAAATCAAAGTTGTTTCTACGTCCCTTTAACCCAAAATtcaatgtgatgacattgaatcaatgtggaaaacttaTAGGATTTGCAAAAGGTCATCAACTTAAAggcatttcttattttttttctaacccaactttgaacctaaatccaatgaaatggcaaaaaaaaatggttgatttcacattgaattcacattagttgaaaactcaaccaaatgtaattcAAAACTAAATGTTTATCTAATGTCTGTGCCtagtgggtagctagctagcagtatCTGTGCTATTGTCTTGAAGCAAAAATGTAATGAGTGTACGGACAATAAAAAAAACTCTAACT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1710634 lncRNA downstream 22307 82145162 ~ 82150162 (-) False G1496396
TU1710635 lncRNA downstream 22307 82145162 ~ 82150162 (-) False G1496396
TU1710636 lncRNA downstream 22307 82145162 ~ 82150162 (-) True G1496396
TU1710555 lncRNA downstream 43011 82129190 ~ 82129458 (-) True G1496337
TU1710536 lncRNA downstream 84030 82088224 ~ 82088439 (-) True G1496318
TU1710680 lncRNA upstream 46600 82221452 ~ 82221665 (-) True G1496439
TU1710681 lncRNA upstream 47455 82222307 ~ 82222515 (-) True G1496440
TU1710948 lncRNA upstream 61360 82236212 ~ 82245221 (-) True G1496689
TU1710961 lncRNA upstream 72456 82247308 ~ 82247517 (-) True G1496691
TU1710969 lncRNA upstream 102388 82277240 ~ 82278308 (-) True G1496699
XM_021570005.2 mRNA downstream 2668 82163141 ~ 82169801 (-) False LOC110494710
XM_021570004.2 mRNA downstream 4859 82163439 ~ 82167610 (-) True LOC110494710
XM_036950754.1 mRNA downstream 9373 82156033 ~ 82163096 (-) True LOC110494709
XM_021570003.2 mRNA downstream 12505 82156033 ~ 82159964 (-) False LOC110494709
XM_036948437.1 mRNA downstream 184073 81986912 ~ 81988396 (-) True LOC118940160
LOC110493272 mRNA upstream 26653 82201505 ~ 82201980 (-) True LOC110493272
XM_021570512.2 mRNA upstream 30583 82205435 ~ 82208611 (-) True LOC110495198
XM_021570016.2 mRNA upstream 255170 82430022 ~ 82443873 (-) True LOC110494717
NM_001124574.1 mRNA upstream 274857 82449709 ~ 82455853 (-) True csrp1
XM_021570022.2 mRNA upstream 544292 82719144 ~ 82729125 (-) False LOC110494720
TU1709673 other downstream 845356 81326685 ~ 81327113 (-) True G1495552
TU1709656 other downstream 858154 81311747 ~ 81314315 (-) True G1495538
TU1709315 other downstream 1057231 81110445 ~ 81115238 (-) True G1495222
TU1709210 other downstream 1068555 81093519 ~ 81103914 (-) True LOC110494689
TU1709196 other downstream 1105787 81065971 ~ 81066682 (-) True G1495113
TU1710947 other upstream 60276 82235128 ~ 82240264 (-) False G1496689
TU1710950 other upstream 60276 82235128 ~ 82245987 (-) False G1496689
TU1711213 other upstream 479620 82654472 ~ 82661638 (-) True G1496921
TU1712523 other upstream 1430391 83605243 ~ 83605753 (-) True G1498077
TU1712995 other upstream 1807489 83982341 ~ 83982894 (-) True G1498442

Expression Profile