RNA id: TU1710950


Basic Information

Item Value
RNA id TU1710950
length 2119
RNA type TUCP
GC content 0.43
exon number 2
gene id G1496689
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 82235128 ~ 82245987 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGGCTTCACTGCACGCTCTGCAGTCTTtaactcctcctcttcttctcctcaaaTGCAGCGGAGATCTCCAGCATTGACTTGTTTTGATATAATAAGTCTGGCAAAGCTTTTTGGGGTGCAAGAACCGATatTCCCAGCAGAAGTCCTGACCTCCTCTCCAGGTTGATGATAAATTGAGCACCTGTCCTTGAGACTGAGGTAGTAGATTGAATAGTTGTGGGGTATATGTCCTCCCTCTGACATAACTATACAATCTACTGTCTTTCCTAAGGAGACAGACCAATCGTCAATACCCCTGAAGCTAGACCATTTTCCCCTGGCTGTCCCATCCATCTCCCCAGCCTGGACACCTGCCCGCAACCTGTCTGTGTTCTGTGGGGTAGTTAACAATTAGCATATCACATCCATTCACTGAATGTTCCAGGACAACATGAGGATGTGCAACATTTCCTCTGTTAGACCACCCAATCCTTTATTTGGTTTACAGCGATTGGGGCCAATTGTGATATGGCCCTATTGTGTTTGAGTGAAAGTGTGCTTTagggtgagtgtgtttgtgttgtcgcCTCTCGCTGTATGTGTTTGAATGACATTCCCCCCTCATCCGTCAGCCTTTTAGGTGAGTGTGTCCTGGCGAGGTGAGGTAGTAGGTTGTATAGTTTGTGAAGGGATAGAATCCTATTCAGGTGATAACTATACAGTCTATTGCCTTCCTTGAGAGGCACAATGACCGTCCGCAGCGATGAGGAACTCCACAGAAAACTGCTTGTTGAATTCCTCTGCATTTTATGCAATCTTACTGTGGAAAAGCAACAGAGGAAGCACTGGTGTGTTTATTACAGTTTTCTAGCGTCACCTAGTGGCCAAGGAGCAGCAGGACTCCAGAGACATTCGACCGGAAGGTTCCCGTAGGCAGGGGTGGAAAGAGAACTGAAATATCCTACTCAAGGAGGAGTACTGTTACTTTAAGCAATGCAAAATAAAGTGCATAAAGAATAAAGTTGGCAGACTTCAATAAACTTCATATTCCAGACATAAACATGTCTCATTCTTTCACCCTTTCAATCCATCATTCACCCCTCTGTTACATCTTACTTATCCATGGGACCGGCTGACATTCACTCACTCATCCATTCATACTCTTTCCCTCGcccactcactccctcactcacaaACTATCTTTTCCCTCACTcaccaggggtggaaagagtaCTGAAATATATTACTCAAGTAGAAGTACTGTTACTTtgaaaatacaacaacaacaaaaaagtactCAGAAAAGCTACTCAATTACAGTAACGAGAGTAGTTGTAATGAGTTACTTTACACCTCTGCTCATATGTTCACGACTCAGAGCAGAAAGTAAAGAATATGAAATTAACTTAATAGAGAATGCATGAGTTTGACATAATCtaaactacagtggggcaaaaagtatttagtcagccaccaattgtgcaatttctcccacttaaaaagatgagagaggcctgtaattttcatcataagtacacttcaactatgacagacaaaatgagaaaaataaatccagaaaatcacattgtaggatttttaattaatttatttgcaaattatggaggaaaataagtatttggtcacctacaaacaagcaatatttctaactctcacagacctgtaacttcttctttaagaggctcctctgtcctccactcgttacctgtattaatggcacctgtttgaacttgttatcagtataaaagacacctgtccacaaccttaaacagtcacactccaaactccactatggccaagaccaaagagctgtcaaaggacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctacaataagtaagcagcttggtttgaagaaatcaactgtgggagcaattattaggaaatggaagacatacaagaccactgataatctccctcgatctggggctccacgcaagatctcaccctgtggggtcaaaatgatcacaagaacggtgagcaaaaatcccagaaccacacggggggacctagtgaatgacctgcagagagctgggatcaaagtaacaaagcctaccatcagtaacacactacgccgcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1710681 lncRNA downstream 12613 82222307 ~ 82222515 (-) True G1496440
TU1710680 lncRNA downstream 13463 82221452 ~ 82221665 (-) True G1496439
TU1710634 lncRNA downstream 84966 82145162 ~ 82150162 (-) False G1496396
TU1710961 lncRNA upstream 1321 82247308 ~ 82247517 (-) True G1496691
TU1710969 lncRNA upstream 31253 82277240 ~ 82278308 (-) True G1496699
TU1711043 lncRNA upstream 161669 82407656 ~ 82407884 (-) True G1496770
TU1711049 lncRNA upstream 168154 82414141 ~ 82414374 (-) True G1496776
TU1711074 lncRNA upstream 213238 82459225 ~ 82459536 (-) True G1496798
XM_021570512.2 mRNA downstream 26517 82205435 ~ 82208611 (-) True LOC110495198
LOC110493272 mRNA downstream 33148 82201505 ~ 82201980 (-) True LOC110493272
XM_021570005.2 mRNA downstream 65327 82163141 ~ 82169801 (-) False LOC110494710
XM_021570004.2 mRNA downstream 67518 82163439 ~ 82167610 (-) True LOC110494710
XM_036950754.1 mRNA downstream 72032 82156033 ~ 82163096 (-) True LOC110494709
XM_021570016.2 mRNA upstream 184035 82430022 ~ 82443873 (-) True LOC110494717
NM_001124574.1 mRNA upstream 203722 82449709 ~ 82455853 (-) True csrp1
XM_021570022.2 mRNA upstream 473157 82719144 ~ 82729125 (-) False LOC110494720
XM_021570023.2 mRNA upstream 473321 82719308 ~ 82729139 (-) True LOC110494720
XM_021570024.2 mRNA upstream 486971 82732958 ~ 82749658 (-) True zgc:66479
TU1710622 other downstream 60276 82172469 ~ 82174852 (-) False G1496390
TU1710627 other downstream 60276 82172469 ~ 82174852 (-) True G1496390
TU1709673 other downstream 908015 81326685 ~ 81327113 (-) True G1495552
TU1709656 other downstream 920813 81311747 ~ 81314315 (-) True G1495538
TU1709315 other downstream 1119890 81110445 ~ 81115238 (-) True G1495222
TU1711213 other upstream 408485 82654472 ~ 82661638 (-) True G1496921
TU1712523 other upstream 1359256 83605243 ~ 83605753 (-) True G1498077
TU1712995 other upstream 1736354 83982341 ~ 83982894 (-) True G1498442
TU1713103 other upstream 1805023 84051010 ~ 84057392 (-) True G1498522
TU1714505 other upstream 2975138 85221125 ~ 85223119 (-) True G1499671

Expression Profile