RNA id: TU1711842


Basic Information

Item Value
RNA id TU1711842
length 2260
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G1497479
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83319029 ~ 83321822 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTcgtataatttaaaaagcaggtcactcgGTGTAGGCAAAACcttaagcaaataggtaaactgtgatatgactaaagagttaatcagggtgatttttccacaagtaggcaggtattttcctttccatggtagcaagatcttatctatttttgctaactttctataaaaatttattggagtgagatcatttagTTCTTTcgggatttgtataccgagtatgtccacatccctgTCAGACCATGTAATTGgaaaactacacggtaatgtaaaagttaaattttttagtgatccaatacgtaatatcaaaatttggttttaatccagaaaGGTTAGCAAAAgcatctagatcctctatgaggctatGAGGCTGTGAAGGTATTCTAATagtgttttttaaagaaaacatgaatcatcagcgtacaatgacacctttgtttttaagccacaGATGTTTAATTCCATAATATTATTATTGGATCAAATGTTAAGAACTAACATTtcaatggcaataataaatagacatgtcgatagtggacaaccttgttttactcctcttgacagtttaaactTTTTGAGATGTAGCCTTTATTTACTATTGTAACATCAGCTTCCAATTCACACTCCCAAACACTTAGATCCCCGGAATGCAgaccactttccagctcactctCCAAACCCAATCACTGGAATTCTTATCCCATCTATTTGACTCCCCTTCCTCTAACCcagctttttatggcggttttggaacagtggcttcttccttgctgggcagcctttcaggttatgtcgatataggactcattttactgtggatatagatacttttgtacctgtttcctccagcatcttcacaaggtcctttgctgttgttctgggattgatttgcacttttcgtaccaaagtacattcatctctaggagacagaaagcttctacttcctgagcggtatgatggctgtgtggtcccatggtgttaatacttgcgtactattgtttgtacagattaaagtggtaccttcaggtgtttggaaattgctcccaaggatgaaccagacttgtggaggtctacacatttttttctgaggtcttggctgatttcttttgattttcccatgaggcactaagttttaaggtaggcctagaaatacatccacaggtatacctccaattgactcaaatgatgtcaattagcctatcagaagcttctaaagccatgacataattttctggaattttccaagctgtttaaaggcacagtcaacttagtgtatgcaaacttctgacccactggaattgtgatacagtgaattacaagttaaataatccgtctgtaaacaattgttggaaaaattacttgtgtcatgcacaaagtagatgtcctaaccgacttgccaaaactataatttgttaacaagaaatttatggtggttgaaaaacgagttttaatgactccaacctaagtgtatgtaaacttccaacttcaactgtgtatatatatataaatatatatatatataaaaatcttggtggcaaatgggtcttccaaatggacaatgactccaaggtgtggcaaaatggcttaaagacaacaacaaaaaagtcaaggtattggagtggccaacgccttgacctcaatcccatagaacatttgtgggcagaactgaaaaggtatgtgcgagcaaggaggcctacaccagctctgtcaggaggaatgggccaaaattcacccaacttattctgggaagcttgtttgacccaagttaataaaTTTGTaggtaatgctaccaaaaactaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaaaaaaagctgaaataaattgttctcgctactattattttgacatttcacgttcttaaaataaattggtgatcctaactgagctaaaacagggaatttcttctaggattaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggttaaggttaaggtgtatgtagacttccgacttcaactgtaatatgGTAATTCCCAGTGGTGTGGTGTTTTCTACTATAGGTGTTTCCTAAAGCAGTGTGAACATCTAACGGCTTTGTGAGTTACACTGCAATGATACATCAGACTGTACCGGCcagatacagtggcaagaaaaagtatgtgaacgctttggaattacctggatttacctggatttctgcataaattagtcagaaaatttgatctgatcttcatcttagtcacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1711814 lncRNA upstream 49880 83268653 ~ 83269149 (+) True G1497456
TU1711759 lncRNA upstream 51902 83264523 ~ 83267127 (+) False G1497405
TU1711762 lncRNA upstream 51902 83264523 ~ 83267127 (+) False G1497405
TU1711761 lncRNA upstream 51902 83265557 ~ 83267127 (+) False G1497405
TU1711757 lncRNA upstream 51902 83266289 ~ 83267127 (+) True G1497405
TU1711868 lncRNA downstream 33920 83355742 ~ 83355942 (+) True G1497504
TU1711871 lncRNA downstream 39932 83361754 ~ 83362064 (+) True G1497507
TU1711873 lncRNA downstream 43010 83364832 ~ 83365207 (+) True G1497509
TU1711852 lncRNA downstream 50519 83372341 ~ 83372838 (+) True G1497488
TU1711879 lncRNA downstream 57071 83378893 ~ 83379174 (+) True G1497515
XM_036950779.1 mRNA upstream 7665 83269647 ~ 83311364 (+) False LOC110494727
XM_036950782.1 mRNA upstream 7665 83288678 ~ 83311364 (+) False LOC110494727
XM_036950783.1 mRNA upstream 7665 83290124 ~ 83311364 (+) False LOC110494727
XM_036950780.1 mRNA upstream 7665 83290125 ~ 83311364 (+) False LOC110494727
XM_036950781.1 mRNA upstream 7665 83295118 ~ 83311364 (+) False LOC110494727
trnae-uuc-8 mRNA downstream 116263 83438085 ~ 83438156 (+) True trnae-uuc-8
trnae-uuc-9 mRNA downstream 117603 83439425 ~ 83439496 (+) True trnae-uuc-9
trnar-acg-8 mRNA downstream 118659 83440481 ~ 83440553 (+) True trnar-acg-8
trnae-uuc-10 mRNA downstream 118942 83440764 ~ 83440835 (+) True trnae-uuc-10
trnar-acg-9 mRNA downstream 119998 83441820 ~ 83441892 (+) True trnar-acg-9
TU1710572 other upstream 1149279 82163206 ~ 82169750 (+) False G1496351
TU1710167 other upstream 1485928 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 1716872 81432211 ~ 81602157 (+) True LOC110494696
TU1709462 other upstream 1980866 81337017 ~ 81338163 (+) True G1495362
TU1709446 other upstream 2025103 81293440 ~ 81293926 (+) True G1495346
TU1712329 other downstream 292443 83614265 ~ 83634495 (+) True G1497918
TU1712638 other downstream 558110 83879932 ~ 83881188 (+) True LOC110494749
TU1713169 other downstream 804015 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 1174107 84495929 ~ 84497398 (+) True G1498913
TU1713556 other downstream 1194295 84516117 ~ 84517180 (+) False G1498912

Expression Profile