RNA id: TU1711871


Basic Information

Item Value
RNA id TU1711871
length 311
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1497507
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83361754 ~ 83362064 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttaagaagaatcctaatGTCAGCTAAAGATTTACATAAATCTCTGGAACATTCTAACATCTTCATTGacaagtctacgatacgtaaaaaactaaacaagaatggtgttcatgggaggacaacacggaagaagccacttctgTCCAAAAAAAGTTTActaaagtgcacctggatgttccacagtgctactggcaaaatattctgtggacagatgaaactacagttgagttgtttggaaggaacacacaacactatgtgtggagaaaaaaaaggcacagcacaccatcaaaacctcatcccaactgtaaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1711868 lncRNA upstream 5812 83355742 ~ 83355942 (+) True G1497504
TU1711842 lncRNA upstream 39932 83319029 ~ 83321822 (+) False G1497479
TU1711841 lncRNA upstream 39932 83320688 ~ 83321822 (+) True G1497479
TU1711814 lncRNA upstream 92605 83268653 ~ 83269149 (+) True G1497456
TU1711761 lncRNA upstream 94627 83265557 ~ 83267127 (+) False G1497405
TU1711873 lncRNA downstream 2768 83364832 ~ 83365207 (+) True G1497509
TU1711852 lncRNA downstream 10277 83372341 ~ 83372838 (+) True G1497488
TU1711879 lncRNA downstream 16829 83378893 ~ 83379174 (+) True G1497515
TU1711880 lncRNA downstream 20792 83382856 ~ 83383066 (+) True G1497516
TU1711881 lncRNA downstream 21468 83383532 ~ 83383748 (+) True G1497517
XM_036950782.1 mRNA upstream 50390 83288678 ~ 83311364 (+) False LOC110494727
trnae-uuc-8 mRNA downstream 76021 83438085 ~ 83438156 (+) True trnae-uuc-8
trnae-uuc-9 mRNA downstream 77361 83439425 ~ 83439496 (+) True trnae-uuc-9
trnar-acg-8 mRNA downstream 78417 83440481 ~ 83440553 (+) True trnar-acg-8
trnae-uuc-10 mRNA downstream 78700 83440764 ~ 83440835 (+) True trnae-uuc-10
trnar-acg-9 mRNA downstream 79756 83441820 ~ 83441892 (+) True trnar-acg-9
TU1710572 other upstream 1192004 82163206 ~ 82169750 (+) False G1496351
TU1710167 other upstream 1528653 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 1759597 81432211 ~ 81602157 (+) True LOC110494696
TU1709462 other upstream 2023591 81337017 ~ 81338163 (+) True G1495362
TU1709446 other upstream 2067828 81293440 ~ 81293926 (+) True G1495346
TU1712329 other downstream 252201 83614265 ~ 83634495 (+) True G1497918
TU1712638 other downstream 517868 83879932 ~ 83881188 (+) True LOC110494749
TU1713169 other downstream 763773 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 1133865 84495929 ~ 84497398 (+) True G1498913
TU1713556 other downstream 1154053 84516117 ~ 84517180 (+) False G1498912

Expression Profile