RNA id: TU1711892


Basic Information

Item Value
RNA id TU1711892
length 218
lncRNA type intronic
GC content 0.34
exon number 2
gene id G1497528
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83400521 ~ 83401231 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCTATAGGGGGGAGTTTTGTTATGCTCCACAACGCTCAATCTGAACTTTAAACACACGTCACTTGCGTAAGGTATTGGAAGTAGAAGGAttttatctttcatatcagcgagaaatcattgaaaaaaaacaaaaaaaggttaaattgatacacaccttgATAGTGTTAgagcattttctaaattcaaacgCAATTGGACACAGACATTTTAGAAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1711881 lncRNA upstream 16773 83383532 ~ 83383748 (+) True G1497517
TU1711880 lncRNA upstream 17455 83382856 ~ 83383066 (+) True G1497516
TU1711879 lncRNA upstream 21347 83378893 ~ 83379174 (+) True G1497515
TU1711852 lncRNA upstream 27683 83372341 ~ 83372838 (+) True G1497488
TU1711873 lncRNA upstream 35314 83364832 ~ 83365207 (+) True G1497509
TU1711900 lncRNA downstream 8466 83409697 ~ 83409962 (+) True G1497536
TU1711903 lncRNA downstream 16706 83417937 ~ 83418255 (+) True G1497539
TU1712316 lncRNA downstream 30631 83431862 ~ 83432122 (+) True G1497906
TU1712348 lncRNA downstream 51621 83452852 ~ 83460842 (+) True G1497934
TU1712354 lncRNA downstream 58107 83459338 ~ 83470768 (+) False G1497938
XM_036950782.1 mRNA upstream 89157 83288678 ~ 83311364 (+) False LOC110494727
trnae-uuc-8 mRNA downstream 36854 83438085 ~ 83438156 (+) True trnae-uuc-8
trnae-uuc-9 mRNA downstream 38194 83439425 ~ 83439496 (+) True trnae-uuc-9
trnar-acg-8 mRNA downstream 39250 83440481 ~ 83440553 (+) True trnar-acg-8
trnae-uuc-10 mRNA downstream 39533 83440764 ~ 83440835 (+) True trnae-uuc-10
trnar-acg-9 mRNA downstream 40589 83441820 ~ 83441892 (+) True trnar-acg-9
TU1710572 other upstream 1230771 82163206 ~ 82169750 (+) False G1496351
TU1710167 other upstream 1567420 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 1798364 81432211 ~ 81602157 (+) True LOC110494696
TU1709462 other upstream 2062358 81337017 ~ 81338163 (+) True G1495362
TU1709446 other upstream 2106595 81293440 ~ 81293926 (+) True G1495346
TU1712329 other downstream 213034 83614265 ~ 83634495 (+) True G1497918
TU1712638 other downstream 478701 83879932 ~ 83881188 (+) True LOC110494749
TU1713169 other downstream 724606 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 1094698 84495929 ~ 84497398 (+) True G1498913
TU1713556 other downstream 1114886 84516117 ~ 84517180 (+) False G1498912

Expression Profile