RNA id: TU1712430



Basic Information


Item Value
RNA id TU1712430
length 1262
lncRNA type read_through
GC content 0.40
exon number 4
gene id G1498010
representative False

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83434570 ~ 83524555 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gttatcagacacgttatccattgcgccactggccccacgtctaagctgaagtcaggacacacctaggccagtgtacacagtcatagcttctgtcaccgacaaggttccttgggatttctgttacagatgcaaatcttaatttgatcctcctgttgttgcatgaatattactgcagagcaagaaatgcagccatgaagtctattcaacgtttaaaatgccttgtataatttgaatctacataacatgtcacatttcctgttgctgagggaatattgttgtgttgtgtgaaactgctgccagttaaaatgcagtatctgttgttacacaagtgcatcccaaacaacaagatattctttcccataccgggagttgaacccgggagacctgggtgaaaaccaggaatcctaaccggtagaccatatgggaagacacatacttaaaatacacatcacagacaaatctttaaatgttgacattatgcctgttggattaaaagctacatcttttttttctctgagatgttggggaatgtccagatgaaatcagtctaaaatgagtttgaagtgagaacagccagaagcactgaaaagtattcagtatcaatcccggcttgaattcaatcaattaaattaagtattgagccagccaggagtctaacctagaatcttctgatccgtagtcagacacgttatccattgcgccactggccccacgtctaagctgaagtcaggtcacagctagaccagtgtacacagtcattgcgtctgtcaacaacaaggttccttggttttctgtttcagatgcatatcttaatttgatcctcctgttgttgcatgaattttactgcagagcaagaaatgcaaacttgaagtgtattcaatgtttaaaaagtcttgtaaattatgaatctacaaaacatgtcacatttgctgttgctgagggaatattgttgtgttgtgtgattctgctgccagttaaaatgtggtatctgttcttacacaagtgcatcccaaatgacaagatgttctttcccatactgggagttcaacccgggcgaaaaccaggaatcctaaatgccagaccatatgggaagacagttacttaaaaaaacatcacagacaaatccataaacgttgaaatgatgcttgttgtattacaagctccatcttttttctcagagatgttggagaaaagtcccatataaaatcagtctaaaatgtgtttgaatcgagaactgccagacacaatgaaaagtatacagt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1712311 lncRNA downstream 6462 83427901 ~ 83428108 (-) True G1497901
TU1712309 lncRNA downstream 13931 83419988 ~ 83420639 (-) True G1497899
TU1712299 lncRNA downstream 39399 83394883 ~ 83395171 (-) True G1497891
TU1712297 lncRNA downstream 41283 83393045 ~ 83393287 (-) True G1497889
TU1712295 lncRNA downstream 54984 83379381 ~ 83379586 (-) True G1497887
TU1712464 lncRNA upstream 2068 83526623 ~ 83527612 (-) True G1498033
TU1712482 lncRNA upstream 35555 83560110 ~ 83562154 (-) False G1498045
TU1712483 lncRNA upstream 35555 83560110 ~ 83562154 (-) False G1498045
TU1712481 lncRNA upstream 36058 83560613 ~ 83562154 (-) False G1498045
TU1712484 lncRNA upstream 36058 83560613 ~ 83562154 (-) False G1498045
XM_021570050.2 mRNA downstream 25855 83397640 ~ 83408715 (-) True LOC110494731
XM_036948439.1 mRNA downstream 39688 83388660 ~ 83394882 (-) True LOC110494730
XM_021570051.2 mRNA downstream 47239 83385666 ~ 83387331 (-) True LOC110494732
XM_021570048.2 mRNA downstream 57964 83367244 ~ 83376606 (-) True LOC110494729
XM_021570047.2 mRNA downstream 90719 83323505 ~ 83343851 (-) True LOC110494728
XM_021570052.2 mRNA upstream 7957 83532512 ~ 83553720 (-) True LOC110494733
XM_021570060.2 mRNA upstream 84287 83608842 ~ 83629053 (-) False si:dkey-261l7.2
XM_021570061.2 mRNA upstream 84287 83608842 ~ 83629064 (-) True si:dkey-261l7.2
XM_021570068.2 mRNA upstream 313296 83837851 ~ 83849174 (-) False ccdc66
XM_021570069.2 mRNA upstream 313296 83837851 ~ 83849175 (-) False ccdc66
TU1711213 other downstream 772932 82654472 ~ 82661638 (-) True G1496921
TU1710950 other downstream 1188583 82235128 ~ 82245987 (-) False G1496689
TU1710947 other downstream 1194306 82235128 ~ 82240264 (-) False G1496689
TU1710622 other downstream 1259718 82172469 ~ 82174852 (-) False G1496390
TU1712523 other upstream 80688 83605243 ~ 83605753 (-) True G1498077
TU1712995 other upstream 457786 83982341 ~ 83982894 (-) True G1498442
TU1713103 other upstream 526455 84051010 ~ 84057392 (-) True G1498522
TU1714505 other upstream 1696570 85221125 ~ 85223119 (-) True G1499671
TU1714519 other upstream 1762101 85286656 ~ 85288117 (-) False G1499684

Expression Profile