RNA id: TU1712464



Basic Information


Item Value
RNA id TU1712464
length 990
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1498033
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83526623 ~ 83527612 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACTGGATcaattatatttattataatcaacAGCTCTTTATCAATTATACCAGAGATGCAATAAAAGGATTGGCAGATCAGACTGAAGCGACCAGCCCGATGGCTTGGCAGAATAGAATAGCCTTGGATATGTTACTGGCTGAAAAGGGTGGGGGGTGAATGAGGTTCGGAGCAGAATGTTGTACTTTCATCCCCGATAACACAGCTCCAGACGGATCAGTGACCAAGGCCCTGGCAGAGAACTCTGGAGTAGATAATGCTctaacaaattggtttaatttttaaaatattttttatcctttatttaactaggcatgtcagttaagaaaacattcttattttcaatgacggccttggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcggggatttgaacttgcaaccttctggttactatgctaccctgccgccccagggcaGATAGTGTGTCTGGGAAATGAAAAAAATCTCATGATCACTGTGTTTTGCACAGCCTTCACCTGTGTGACTATGTTAGTTTTGTGCGGATGTTGTGAGAGAGGTTCTCATTTCTAGGACTCGATGGAAATCGATGACGGAATATGGTGAGATACGGACCGATTCCGATGAAGAATACAGACTTCCAGGCCTAGGAGAAGGCTCTGTGTCTTTTAATTATGAGGAGCCAATGTTGGATGAGACTGTTTTCAATGTTTTATTAAAGGCTGTTCATTTCATGAAGATTATGATGAAGATCCTAAACCGGAAGAGTTATAATTGGATATAGGCGTAGAACAGtcattgatgaggaattgaatgTAAATACATGTGTTGTTTTGCTATATTcttgtataaaaatgaatgttttCATATAGTGTTTGATATGTCAGTATGAATTATTTAGTCATTAAGGGTGGATTGTTAAGATATTTTATCAAGGTTTAAGATAAATGATTAAATAATTCTACCCAGAAACTTAACC

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1712430 lncRNA downstream 2068 83434570 ~ 83524555 (-) False G1498010
TU1712429 lncRNA downstream 2068 83517840 ~ 83524555 (-) True G1498010
TU1712428 lncRNA downstream 2333 83515682 ~ 83524290 (-) False G1498010
TU1712452 lncRNA downstream 5587 83495571 ~ 83521036 (-) True G1498026
TU1712311 lncRNA downstream 98515 83427901 ~ 83428108 (-) True G1497901
TU1712482 lncRNA upstream 32498 83560110 ~ 83562154 (-) False G1498045
TU1712483 lncRNA upstream 32498 83560110 ~ 83562154 (-) False G1498045
TU1712481 lncRNA upstream 33001 83560613 ~ 83562154 (-) False G1498045
TU1712484 lncRNA upstream 33001 83560613 ~ 83562154 (-) False G1498045
TU1712487 lncRNA upstream 33001 83560613 ~ 83562154 (-) False G1498045
XM_021570050.2 mRNA downstream 117908 83397640 ~ 83408715 (-) True LOC110494731
XM_036948439.1 mRNA downstream 131741 83388660 ~ 83394882 (-) True LOC110494730
XM_021570051.2 mRNA downstream 139292 83385666 ~ 83387331 (-) True LOC110494732
XM_021570048.2 mRNA downstream 150017 83367244 ~ 83376606 (-) True LOC110494729
XM_021570047.2 mRNA downstream 182772 83323505 ~ 83343851 (-) True LOC110494728
XM_021570052.2 mRNA upstream 4900 83532512 ~ 83553720 (-) True LOC110494733
XM_021570060.2 mRNA upstream 81230 83608842 ~ 83629053 (-) False si:dkey-261l7.2
XM_021570061.2 mRNA upstream 81230 83608842 ~ 83629064 (-) True si:dkey-261l7.2
XM_021570068.2 mRNA upstream 310239 83837851 ~ 83849174 (-) False ccdc66
XM_021570069.2 mRNA upstream 310239 83837851 ~ 83849175 (-) False ccdc66
TU1711213 other downstream 864985 82654472 ~ 82661638 (-) True G1496921
TU1710950 other downstream 1280636 82235128 ~ 82245987 (-) False G1496689
TU1710947 other downstream 1286359 82235128 ~ 82240264 (-) False G1496689
TU1710622 other downstream 1351771 82172469 ~ 82174852 (-) False G1496390
TU1712523 other upstream 77631 83605243 ~ 83605753 (-) True G1498077
TU1712995 other upstream 454729 83982341 ~ 83982894 (-) True G1498442
TU1713103 other upstream 523398 84051010 ~ 84057392 (-) True G1498522
TU1714505 other upstream 1693513 85221125 ~ 85223119 (-) True G1499671
TU1714519 other upstream 1759044 85286656 ~ 85288117 (-) False G1499684

Expression Profile