RNA id: TU1712481



Basic Information


Item Value
RNA id TU1712481
length 514
lncRNA type antisense_over
GC content 0.49
exon number 3
gene id G1498045
representative False

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83560110 ~ 83562154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tggaattgtgaaaacATTTTATTGATTTCCCCATCAGAACTGTCTAAGATCTGGGTCTCTCCTTCTTGCCTTTGTAGAGGGCCAGCAGGGAGACGTTAGCCACTTTGACCACCTTGAAACGTACACCAGGGATATCACCGACGGCGTGGCCCTTACGCCCGAATCCTGCCACAAGAACTTCGTCATTTCCTCGATGAAGTTCAAGCAACCATCATTGGGGACAAAGGCGGTGATCTTCTTGCCGTTCTTGATGAGCTGGACCCTGACACACTTCCTAATGGCGGAGTTGGGTTGCTTAGCTTCAACACCACTTTCTCAAGTACAATTCCCTTGGCGTGGGAAGCGCCTCCGAAGGGGTTAGCCTTCAGGGCAGTGCCGAGATGGGCCTTTTTGTACTGTTTATCGTGCCATCTCTGCTCACGACGGTGGTTACGCAGCTTTCTGGCTGTACGCAGACCACGACACTTTCCTGAAGAGATACAAAGTAAATAGTTAAAAATGCTAGCTTTTGACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1712464 lncRNA downstream 33001 83526623 ~ 83527612 (-) True G1498033
TU1712430 lncRNA downstream 36058 83434570 ~ 83524555 (-) False G1498010
TU1712490 lncRNA upstream 1758 83563912 ~ 83564196 (-) True G1498047
TU1712513 lncRNA upstream 34523 83596677 ~ 83596879 (-) True G1498068
TU1712518 lncRNA upstream 41531 83603685 ~ 83603960 (-) True G1498073
TU1712519 lncRNA upstream 41857 83604011 ~ 83604225 (-) True G1498074
TU1712520 lncRNA upstream 42153 83604307 ~ 83604519 (-) True G1498075
XM_021570052.2 mRNA downstream 6893 83532512 ~ 83553720 (-) True LOC110494733
XM_021570050.2 mRNA downstream 151898 83397640 ~ 83408715 (-) True LOC110494731
XM_036948439.1 mRNA downstream 165731 83388660 ~ 83394882 (-) True LOC110494730
XM_021570051.2 mRNA downstream 173282 83385666 ~ 83387331 (-) True LOC110494732
XM_021570048.2 mRNA downstream 184007 83367244 ~ 83376606 (-) True LOC110494729
XM_021570060.2 mRNA upstream 46688 83608842 ~ 83629053 (-) False si:dkey-261l7.2
XM_021570061.2 mRNA upstream 46688 83608842 ~ 83629064 (-) True si:dkey-261l7.2
XM_021570068.2 mRNA upstream 275697 83837851 ~ 83849174 (-) False ccdc66
XM_021570069.2 mRNA upstream 275697 83837851 ~ 83849175 (-) False ccdc66
XM_021570071.2 mRNA upstream 275697 83837851 ~ 83849176 (-) False ccdc66
TU1711213 other downstream 898975 82654472 ~ 82661638 (-) True G1496921
TU1710950 other downstream 1314626 82235128 ~ 82245987 (-) False G1496689
TU1710947 other downstream 1320349 82235128 ~ 82240264 (-) False G1496689
TU1710622 other downstream 1385761 82172469 ~ 82174852 (-) False G1496390
TU1712523 other upstream 43089 83605243 ~ 83605753 (-) True G1498077
TU1712995 other upstream 420187 83982341 ~ 83982894 (-) True G1498442
TU1713103 other upstream 488856 84051010 ~ 84057392 (-) True G1498522
TU1714505 other upstream 1658971 85221125 ~ 85223119 (-) True G1499671
TU1714519 other upstream 1724502 85286656 ~ 85288117 (-) False G1499684

Expression Profile