RNA id: TU1712396


Basic Information

Item Value
RNA id TU1712396
length 3712
lncRNA type intronic
GC content 0.44
exon number 2
gene id G1497978
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83618856 ~ 83622608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttcagtaaaaagctgcgggatggggctggagaaatttaACCACCCtctctaattcatagacagagctatggatgcaagaacTGACCATCACGCACCCTTCaatagatgtatttatttttgttggaGGAGACGACCCAAGGTTTCTCGCCTTGGACCTCCTCCAAAGGATTTTGAGAAGGATGCGAGGGGTTAAGGAGAGATGAATTGGGACAGAGCTCACTTATTCTGTTTGCACTGATATCTTTGTTCTAATTGTGCCATTTCCACAGATGGCCCTGGTTTGCTGATGACATCTGATTTGACTCCTGCATTACTAACTTTATTGAATAAAACCTCCAATGCCAAATTTAAATGAGATTGGGAACTACCATTGTAATTGATAGACAATCAGACAATTAAAATCAGTTTTCCTCAGTGCAATGTTTGGTGAATGCATGGTGTCGTTTTGTCCTCAGTCCTCCTTTGAACGCTGCGTGTACTGATTCAGTTCTAGAACAACCATCAAGTCCATCCTCAACTCCAACGGATTGTCCGGTCTGCTGAGGGTCATTGACTGCCACCTGCCCTCCATAGAGGTCCTGCACGACTCCAGGGCAAGGAAGAGATCGCCGCCGACCCCTTCTACCCTCTCTTCCAAAGACTCCTCTCTGGCAAACGGTTGAGGTTAATCACGACCAAAACCCTGTCACATTGAACAGTTTCTTCCCCATCCATGGACTTCGCACTATTCATCCACAGACTACGCACCCTACACTATCATCCCTGAACATCTCTTACATGCATCATTTATAATGTAGCTTATAAATGTTCATAATAAACTATATTGTGCGTGTGGATCCTTGGAAATTCTGCATCTATAATCTGTTTATTGTACTGGATAAACTGTAGCAGATTCTGCCCTTTGTGTTgttttgctctccctctctcccaggacCCGTCCTCTGCTCACTCGACCACATTTCTCTCTCGACTCAGTGTTTGCTTGCGCAATGACGCTTCATCTTCACGTGCGCCATCTCGTACACGTTCAACTTTTTAATTGGATTTGACAACATACACCTAGTGGGTGATAGAGGAcaacaatgttaagcttgagtggacaagtgacagcatggaattcaagtaaggagatggacaggtgagagccGGAGAAGAGAGAATCTCCATTTAGGAAAAATGTGTACCCCCTGTGCCACCACCGCGACGACAATATGACTGAGAAAAGGTAGTAATATTAAGAGAGCTGCTCTTTGGGGCGATCCATGTCTCTGTCAGGGTCAAAAAGTAAAAGGGACTGAACGGCAGCATAGGCTGAGACGAACTCAGCGTTCCTGACCACAGATCAGCAGTTCCAAACAACACCAGAGACCAGAAATTTCACGTGGTTTGTGCGCAcagggtacactaaattagaatGGTTGCAGTCAAAAGGGTGGAGAGCATCTGTAACGCCTACAGCGAGAAGAGCGAACTGGGATAGGAAACAGTTTCCAAAGCTACAAAAGAGTAAAATGAGACAATCTGAAAATAACTAGGTAAAAATACTCAAttgagagagtggtgtggagccttgccctctttccttcctcaaatatatttattttacttttagatgtgtaaTTCTTGAGAATTTTGACACTAGTACACTgtcggagctaggaacacaagcatttcgctacacccgcaataacatctgctaaatatgtatatgtgaccaataaaattagactAGATTTAACACAGCAGAACAGTCTGTTTTGGCGATAGCCTTAGTTGAGATGAATCCGCCGATTACAGCTGCTGAGAAAACAGGAGAGACTGAAGTACTACTGGCCTTGAAAAAGGTGAAGAGCACACCTCCCGGtactaattgctgattgcctagGTTGATATGTCAATCATCTGCAAGTTAACAGCAGTCTGCACACCAAGTAGGCAGCACTTAATGTAGACGGCCCTAGCTAGCAAAGATACATTACTAAACAACAGATAGACAAGAAATTATACTTACCactcctggagatatcaggagtctTTTTATTTTAACCTTACTTTACCAGGTAAGTTAACTGAGCACACATTCTCATTTATAGCAACGAGGGAAtacttacaggggagaggaagggggatgaatgagccagttggaagctggggataattaggtggccatgatggtatgagggcccggttgggaatttagccaggacaccggggtcaACACCCCTActtttacgataagtgccatgggatctttagcgaccacagagtcaggacacccgtttaacgtcccagcCGTTAGACGGCACCCTGTGAGTTGACGTCCCAGCCGTTAGACGGCACCCTGTGAGTTGAGCGGTTGGAAATCATTGCTCCGGAGCTCTACGTCCTTTCCAACCACTATGCGCTCACaggaaaaaaaaactaaaaactgccactctagtcattaaaaaaaaaaatcacaatttaaccatCTATTTTTCTGACTACATGGACCTACCATTTGGTTTtaaagtattgaaaccaaaccatgtGAAAAGTATTTTAATAAAACATGACTGTAAGGTGCTCATAATTTCAAATAGAACAAAAAAGTATCCGTTTATAAAAAAAGTTTTTCagtttataaatactttgctacaatgacagtTATCTACACAGCTCGTTCCTTTATTTTAGCATGTGCACATAgtaagtacaccatcatgctttcgggatacgtgtcttttcagattccaaATGGATTCTTTaggttgtggacactacatcactgcaCCCCCTCCCTTGCTCTTAATcttttgtaagtcaccttgattttgcacctgtgcattttatcagtttctttatgaaaatatttagcaaaCTCCATGACAGCAACTAAAGCAAGGGGCTATTAGCAGCACACAGCCTATGAATGCATGCAGGGCCTGGCATTCCCTGATCTGGTGAAGAGAGCGCTACTGGAGCGGGTGAGAAGGCCGATGCTCCAGCCTTTTGGGGATCACGCTCAGCTCTCCAGCTCCGCTCACATGGTCtgcacagggcaatgtcccaaaTTACTGCCCTGGGATATTTTGGGGGAGACCAGAGGATAAGAGTGCCTCCTACTAGCTCTCCAACACCATCTGGTATCCCATtcagggaccaaccaggaccaaacCTGCTTAGCTTCATAGACAAGCCAGCAGTGgggtgcagggtggtatgctgctggctataGAATTATAAGTATAGTCAGATAAACTGATGCCTGACACGGACATGTTAGCGTGGCGGGAAGACCATGAACCAAGAGGGTACCATGAACCAAGAGGGTACCATGAACCAAGAAGTTGCGAGtacaaatcccaggtgaggacattcTGCTCAACCTTAGTAATACTTGTGTACTAAAACAGTcttaaagcctaggcattaggtTCAAAATTGTCAAAGAAACTAACTCAGAAAAGTGTGTGCACGCATTAATAAGAGGCCTGTTATAACAGTTCTGTGTATGTAGAATGACCCCATGATGTCTGGGCACTCAGCCAATACTTGACAGAAACTAACTGGTTCCTCTTAAGTTAACTGGAAACACAGTAAAGGTTTTATCCTGCACACCAATGATAAAGCTATTGTTCTGTCTGGAGCCTGTTTCTGGGCCAAAGAAGCATGTTTTGTGTGTGACCAGTACGAACATACATGATCTGGGCCGACAGTCAAAGGTACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1712395 lncRNA upstream 10648 83607724 ~ 83608208 (+) True G1497977
TU1712392 lncRNA upstream 12990 83605658 ~ 83605866 (+) True G1497974
TU1712334 lncRNA upstream 55794 83562547 ~ 83563062 (+) True LOC110494735
TU1712364 lncRNA upstream 90034 83528602 ~ 83528822 (+) True G1497947
TU1712327 lncRNA upstream 99901 83511112 ~ 83518955 (+) True G1497916
TU1712425 lncRNA downstream 65058 83687666 ~ 83689358 (+) True G1498007
TU1712406 lncRNA downstream 78182 83700790 ~ 83701392 (+) True LOC110494741
TU1712407 lncRNA downstream 79858 83702466 ~ 83702810 (+) True G1497989
TU1712576 lncRNA downstream 81611 83704219 ~ 83748099 (+) False LOC110493277
TU1712606 lncRNA downstream 125780 83748388 ~ 83748612 (+) True G1498156
XM_021570059.2 mRNA upstream 9968 83603639 ~ 83608888 (+) True irak1bp1
XM_021570058.2 mRNA upstream 23315 83592762 ~ 83595541 (+) True hesx1
XM_036950786.1 mRNA upstream 26237 83576027 ~ 83592619 (+) False LOC110494736
XM_036950787.1 mRNA upstream 26237 83576027 ~ 83592619 (+) True LOC110494736
XM_021570055.2 mRNA upstream 43672 83562178 ~ 83575184 (+) False LOC110494735
XM_021570064.2 mRNA downstream 6580 83629188 ~ 83630857 (+) False LOC110494740
XM_021570063.2 mRNA downstream 6587 83629195 ~ 83630857 (+) True LOC110494740
XM_036950788.1 mRNA downstream 19837 83642445 ~ 83701922 (+) False LOC110494741
XM_036950789.1 mRNA downstream 19839 83642447 ~ 83701921 (+) False LOC110494741
XM_036950790.1 mRNA downstream 20056 83642664 ~ 83701923 (+) False LOC110494741
TU1710572 other upstream 1449106 82163206 ~ 82169750 (+) False G1496351
TU1710167 other upstream 1785755 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 2016699 81432211 ~ 81602157 (+) True LOC110494696
TU1709462 other upstream 2280693 81337017 ~ 81338163 (+) True G1495362
TU1709446 other upstream 2324930 81293440 ~ 81293926 (+) True G1495346
TU1712638 other downstream 257324 83879932 ~ 83881188 (+) True LOC110494749
TU1713169 other downstream 503229 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 873321 84495929 ~ 84497398 (+) True G1498913
TU1713556 other downstream 893509 84516117 ~ 84517180 (+) False G1498912
TU1713565 other downstream 905157 84527765 ~ 84554229 (+) False G1498912

Expression Profile