RNA id: TU1712777


Basic Information

Item Value
RNA id TU1712777
length 223
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1498310
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83759092 ~ 83759314 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactattattctacaatgtagaaaataatacaaattaagaaaaaccctggaatgagtaggtgtccaaacttttgactggtactgtataggcCACAGGCCTGGGCCCAGGGGCTTCAGCCCCGGTAAACCCCTGCATTAATCCAGCCCTGATTATAGGCTACTGTGGCACTGGCTCTCAAGGTTTGAAGTGGGAACATACTTACACAATTATAGGCTATTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1712775 lncRNA downstream 1229 83757635 ~ 83757863 (-) True G1498308
TU1712561 lncRNA downstream 70870 83687486 ~ 83688222 (-) True G1498115
TU1712520 lncRNA downstream 154573 83604307 ~ 83604519 (-) True G1498075
TU1712519 lncRNA downstream 154867 83604011 ~ 83604225 (-) True G1498074
TU1712518 lncRNA downstream 155132 83603685 ~ 83603960 (-) True G1498073
TU1712784 lncRNA upstream 9559 83768873 ~ 83769236 (-) True G1498317
TU1712791 lncRNA upstream 15612 83774926 ~ 83775173 (-) True G1498321
TU1712793 lncRNA upstream 17033 83776347 ~ 83776650 (-) True G1498323
TU1712803 lncRNA upstream 25816 83785130 ~ 83786636 (-) True G1498330
TU1712812 lncRNA upstream 44562 83803876 ~ 83804129 (-) True G1498339
XM_021570061.2 mRNA downstream 130028 83608842 ~ 83629064 (-) True si:dkey-261l7.2
XM_021570060.2 mRNA downstream 130039 83608842 ~ 83629053 (-) False si:dkey-261l7.2
XM_021570052.2 mRNA downstream 205372 83532512 ~ 83553720 (-) True LOC110494733
XM_021570050.2 mRNA downstream 350377 83397640 ~ 83408715 (-) True LOC110494731
XM_036948439.1 mRNA downstream 364210 83388660 ~ 83394882 (-) True LOC110494730
XM_021570068.2 mRNA upstream 78537 83837851 ~ 83849174 (-) False ccdc66
XM_021570069.2 mRNA upstream 78537 83837851 ~ 83849175 (-) False ccdc66
XM_021570071.2 mRNA upstream 78537 83837851 ~ 83849176 (-) False ccdc66
XM_036950794.1 mRNA upstream 78537 83837851 ~ 83849176 (-) False ccdc66
XM_021570070.2 mRNA upstream 78537 83837851 ~ 83852057 (-) False ccdc66
TU1712523 other downstream 153339 83605243 ~ 83605753 (-) True G1498077
TU1711213 other downstream 1097454 82654472 ~ 82661638 (-) True G1496921
TU1710950 other downstream 1513105 82235128 ~ 82245987 (-) False G1496689
TU1710947 other downstream 1518828 82235128 ~ 82240264 (-) False G1496689
TU1710627 other downstream 1584240 82172469 ~ 82174852 (-) True G1496390
TU1712995 other upstream 223027 83982341 ~ 83982894 (-) True G1498442
TU1713103 other upstream 291696 84051010 ~ 84057392 (-) True G1498522
TU1714505 other upstream 1461811 85221125 ~ 85223119 (-) True G1499671
TU1714519 other upstream 1527342 85286656 ~ 85288117 (-) False G1499684
TU1714522 other upstream 1527342 85286656 ~ 85288117 (-) True G1499684

Expression Profile