RNA id: TU1712905



Basic Information


Item Value
RNA id TU1712905
length 207
lncRNA type intronic
GC content 0.33
exon number 1
gene id G1498364
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83828674 ~ 83828880 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTATCTATAGATAGCTAACGCCAGAGTCTTATGGAGTTTGAATTCAAAATATCCCAAAATAGTATTTTGACTGACTTCGTATAATTTTATGGCAGCCTACTCTGTAGTTTGTTGCTATAATAATGTCAGTGGTGTAGCCTATATGACAATCACATTTGGCAACATACTATTTGTAATATAGGCCTAATGAGCTTAACACTTATTTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1712903 lncRNA downstream 822 83827560 ~ 83827852 (-) True G1498363
TU1712817 lncRNA downstream 19374 83807498 ~ 83809300 (-) True G1498341
TU1712812 lncRNA downstream 24545 83803876 ~ 83804129 (-) True G1498339
TU1712803 lncRNA downstream 42038 83785130 ~ 83786636 (-) True G1498330
TU1712793 lncRNA downstream 52024 83776347 ~ 83776650 (-) True G1498323
TU1712881 lncRNA upstream 22393 83851273 ~ 83860046 (-) True ccdc66
TU1712949 lncRNA upstream 90528 83919408 ~ 83919756 (-) True G1498397
TU1712957 lncRNA upstream 109184 83938064 ~ 83938373 (-) True G1498404
TU1712960 lncRNA upstream 115214 83944094 ~ 83944311 (-) True G1498407
TU1712968 lncRNA upstream 124332 83953212 ~ 83953427 (-) True G1498415
XM_021570061.2 mRNA downstream 199610 83608842 ~ 83629064 (-) True si:dkey-261l7.2
XM_021570060.2 mRNA downstream 199621 83608842 ~ 83629053 (-) False si:dkey-261l7.2
XM_021570052.2 mRNA downstream 274954 83532512 ~ 83553720 (-) True LOC110494733
XM_021570050.2 mRNA downstream 419959 83397640 ~ 83408715 (-) True LOC110494731
XM_036948439.1 mRNA downstream 433792 83388660 ~ 83394882 (-) True LOC110494730
XM_021570068.2 mRNA upstream 8971 83837851 ~ 83849174 (-) False ccdc66
XM_021570069.2 mRNA upstream 8971 83837851 ~ 83849175 (-) False ccdc66
XM_021570071.2 mRNA upstream 8971 83837851 ~ 83849176 (-) False ccdc66
XM_036950794.1 mRNA upstream 8971 83837851 ~ 83849176 (-) False ccdc66
XM_021570070.2 mRNA upstream 8971 83837851 ~ 83852057 (-) False ccdc66
TU1712523 other downstream 222921 83605243 ~ 83605753 (-) True G1498077
TU1711213 other downstream 1167036 82654472 ~ 82661638 (-) True G1496921
TU1710950 other downstream 1582687 82235128 ~ 82245987 (-) False G1496689
TU1710947 other downstream 1588410 82235128 ~ 82240264 (-) False G1496689
TU1710627 other downstream 1653822 82172469 ~ 82174852 (-) True G1496390
TU1712995 other upstream 153461 83982341 ~ 83982894 (-) True G1498442
TU1713103 other upstream 222130 84051010 ~ 84057392 (-) True G1498522
TU1714505 other upstream 1392245 85221125 ~ 85223119 (-) True G1499671
TU1714519 other upstream 1457776 85286656 ~ 85288117 (-) False G1499684
TU1714522 other upstream 1457776 85286656 ~ 85288117 (-) True G1499684

Expression Profile