RNA id: TU1712725


Basic Information

Item Value
RNA id TU1712725
length 270
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1498258
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83954803 ~ 83955072 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actctactttgtctctatactgacgcttagcttgtttgattgactagcggagggaatagctacactgtttgtattcggttatGTTTCCGGTCAcattgccctgattaaaagcagtggttcgcactttcagttttgtgcgaatgctgccatcaatccacggtttctggttggggaaggttttaatattcgccgtgggtacaacatcaccgatgcacttgctaataaactcgctcaccgaatcagcgtggcatcaatgttgttgttctacgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1712720 lncRNA upstream 9668 83944769 ~ 83945135 (+) True G1498253
TU1712718 lncRNA upstream 12263 83942239 ~ 83942540 (+) True G1498251
TU1712714 lncRNA upstream 18376 83936227 ~ 83936427 (+) True G1498247
TU1712713 lncRNA upstream 19699 83934896 ~ 83935104 (+) True G1498246
TU1712703 lncRNA upstream 35114 83919390 ~ 83919689 (+) True G1498238
TU1712726 lncRNA downstream 1492 83956564 ~ 83956839 (+) True G1498259
TU1712989 lncRNA downstream 19824 83974896 ~ 83975137 (+) True G1498436
TU1712991 lncRNA downstream 20462 83975534 ~ 83975749 (+) True G1498438
TU1712993 lncRNA downstream 27016 83982088 ~ 83982360 (+) True G1498440
TU1713004 lncRNA downstream 33538 83988610 ~ 83988970 (+) True G1498451
XM_021570082.2 mRNA upstream 48404 83903921 ~ 83906399 (+) True LOC110494751
XM_021570081.2 mRNA upstream 62187 83890323 ~ 83892616 (+) True LOC110494750
XM_036950796.1 mRNA upstream 64736 83879806 ~ 83890067 (+) False LOC110494749
XM_036950797.1 mRNA upstream 66388 83879805 ~ 83888415 (+) False LOC110494749
XM_021570079.2 mRNA upstream 86608 83863818 ~ 83868195 (+) True LOC110494747
XM_021570083.2 mRNA downstream 49184 84004256 ~ 84017161 (+) True LOC110494753
XM_036950806.1 mRNA downstream 124481 84079553 ~ 84150390 (+) False LOC110494755
XM_036950804.1 mRNA downstream 148287 84103359 ~ 84150390 (+) False LOC110494755
XM_036950805.1 mRNA downstream 148287 84103359 ~ 84150390 (+) False LOC110494755
XM_036950808.1 mRNA downstream 175422 84130494 ~ 84150390 (+) True LOC110494755
TU1712638 other upstream 73615 83879932 ~ 83881188 (+) True LOC110494749
TU1712329 other upstream 320308 83614265 ~ 83634495 (+) True G1497918
TU1710572 other upstream 1785053 82163206 ~ 82169750 (+) False G1496351
TU1710167 other upstream 2121702 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 2352646 81432211 ~ 81602157 (+) True LOC110494696
TU1713169 other downstream 170765 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 540857 84495929 ~ 84497398 (+) True G1498913
TU1713556 other downstream 561045 84516117 ~ 84517180 (+) False G1498912
TU1713565 other downstream 572693 84527765 ~ 84554229 (+) False G1498912
TU1713564 other downstream 589518 84544590 ~ 84565607 (+) False G1498912

Expression Profile