RNA id: TU1713004


Basic Information

Item Value
RNA id TU1713004
length 361
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1498451
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 83988610 ~ 83988970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttaattatgtggtgtgttttggctTGGGggttttgtaggtattgggattgtggtatagtgggttgtctagaaaagtctatggttgcttggagtggttctcaatcagaggcaggtgtttattgttgtctctgattgggaaccatatttaggcagccatattctttgagtgtttcgtgggtgattgttcctgtctcagtgtttgtttgcaccagataaggctgtttaggtttttacgtttattgttttgtattgttcgtgtttatcttttattaaacatgaatcaaaataaccacgctgcattttggtccgcctctccttcatcgGAAGTAAACCGTAACACAAACTAAGGgtgtagaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1712993 lncRNA upstream 6250 83982088 ~ 83982360 (+) True G1498440
TU1712991 lncRNA upstream 12861 83975534 ~ 83975749 (+) True G1498438
TU1712989 lncRNA upstream 13473 83974896 ~ 83975137 (+) True G1498436
TU1712726 lncRNA upstream 31771 83956564 ~ 83956839 (+) True G1498259
TU1712725 lncRNA upstream 33538 83954803 ~ 83955072 (+) True G1498258
TU1713069 lncRNA downstream 43424 84032394 ~ 84033655 (+) False G1498507
TU1713070 lncRNA downstream 43424 84032394 ~ 84038525 (+) False G1498507
TU1713071 lncRNA downstream 43424 84032394 ~ 84033655 (+) False G1498507
TU1713072 lncRNA downstream 43424 84032394 ~ 84033655 (+) False G1498507
TU1713073 lncRNA downstream 43424 84032394 ~ 84033655 (+) False G1498507
XM_021570082.2 mRNA upstream 82211 83903921 ~ 83906399 (+) True LOC110494751
XM_021570081.2 mRNA upstream 95994 83890323 ~ 83892616 (+) True LOC110494750
XM_036950796.1 mRNA upstream 98543 83879806 ~ 83890067 (+) False LOC110494749
XM_036950797.1 mRNA upstream 100195 83879805 ~ 83888415 (+) False LOC110494749
XM_021570079.2 mRNA upstream 120415 83863818 ~ 83868195 (+) True LOC110494747
XM_021570083.2 mRNA downstream 15286 84004256 ~ 84017161 (+) True LOC110494753
XM_036950806.1 mRNA downstream 90583 84079553 ~ 84150390 (+) False LOC110494755
XM_036950804.1 mRNA downstream 114389 84103359 ~ 84150390 (+) False LOC110494755
XM_036950805.1 mRNA downstream 114389 84103359 ~ 84150390 (+) False LOC110494755
XM_036950808.1 mRNA downstream 141524 84130494 ~ 84150390 (+) True LOC110494755
TU1712638 other upstream 107422 83879932 ~ 83881188 (+) True LOC110494749
TU1712329 other upstream 354115 83614265 ~ 83634495 (+) True G1497918
TU1710572 other upstream 1818860 82163206 ~ 82169750 (+) False G1496351
TU1710167 other upstream 2155509 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 2386453 81432211 ~ 81602157 (+) True LOC110494696
TU1713169 other downstream 136867 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 506959 84495929 ~ 84497398 (+) True G1498913
TU1713556 other downstream 527147 84516117 ~ 84517180 (+) False G1498912
TU1713565 other downstream 538795 84527765 ~ 84554229 (+) False G1498912
TU1713564 other downstream 555620 84544590 ~ 84565607 (+) False G1498912

Expression Profile