RNA id: TU1713070


Basic Information

Item Value
RNA id TU1713070
length 1457
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G1498507
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84032394 ~ 84038525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTGAGACTTCACAACAAAGCTCCATGTTTTATTAAAACCAGACAGAATTACACACAAATAGGCACAAATgtacaattgaaaaaaaaattacaataaaACCTTATCTACTTTGTAATTCCCTTTGGTCCATTTCCACATGATGGTTCTGTGCATCTTTAATAAAGGTGAAGTGACTGTAAATGGTATGAGTCAGAGCTGACATTGAAACAATACTGACTTTGACCAGAGGCACTTTCCTACTGTAGTTTCCCTCTACAAGCTCTGAGGAAGTCTACAAAACTATAAATAACTCTTAACTCACAGTTGGTTAACACTAATTCGTTTTCTTAACGCATATCATATTAAAGACTTTTTCCTTTTACTCAAATCAAGATGAGCTAACACCAGCAACACACACATTTAACAAAGTCGCACATTGATTTGTTGAGTAGAGCTAACAATAAGCATGTTTAACAAGCACGGAGTGATTGAGGATAAGAGCATATTAGAAAACATGGTCAAACAAAACGTAAAGCATTTCAGGTTCCATCAAGCGATGCACGACTCAGTGACGGTTCATTTTCAAGTATTCAACATCACAGCTTCGGCGATTACATGGACTTTTATTGTGAGTCATGTTATTAGGTCAAAGTTCATTCTCACATTAAATGAAAGACGGTCCATCGGCGTAAAAATGAAAGCTTGTTGTGATCATCTGGTAACCTGCCTCTATTGTTTAGGAAAGGGCTTCAAAAGCACAAAACATTGCATCGGATTGTTTTTCTACAAAAATATATTGCTTGTTTTGACAATGTGATGTAGAAAATGCCATGGATTGCAATACGTCATGATTCCAATGTGCAACGTTACTTCAGATGCAGGTGCCCATTGCTTATAACAAGGAGAGGACGGTCAAAAAGTCAGTGGAGACGTCACATTCTGTTGATAGTGGGACGCAGTCTCTTCCTCAAAGAACCAACTTAGGGGAAGTGAAGAGGGAATACAACTGGCAAGTTCAAAATGGCCATGATAGGAACATAAGACAGATGAAAGAAAGAGGAAAGAAAggagggaagaaagaaagaaagaaagaaagaaaaagaaagagggaagacTTAACACATATACAGACTTGAGGAGTTAAGACCTCCTCCTCATTAAGACAAAAATGATGTGGATGACATCTTCTCCATGTTTTTAAACCATAGTAACTTGATCCATCCTCCCTGCTGGGtgatccagccagccagccgggTGTTAATGAAGGCAGTCATACAAGACTGGATGGTGGCTCTAAGGTCAGGACAGGTCTTCTTAACGTACAGACCCAGGGCCATGGAGGCCCTCAGCAGCTGCATCTCAGGGGCCACCTCTGTTCTCTGGGCCGCACACAGGCTGTCCACGGTACGCGCAAACTCCTCCACcgcctggggagagagagagagggaggggggaggacaggCGGTTACCCTCGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1713004 lncRNA upstream 43424 83988610 ~ 83988970 (+) True G1498451
TU1712993 lncRNA upstream 50034 83982088 ~ 83982360 (+) True G1498440
TU1712991 lncRNA upstream 56645 83975534 ~ 83975749 (+) True G1498438
TU1712989 lncRNA upstream 57257 83974896 ~ 83975137 (+) True G1498436
TU1712726 lncRNA upstream 75555 83956564 ~ 83956839 (+) True G1498259
TU1713095 lncRNA downstream 8371 84046896 ~ 84047152 (+) True G1498517
TU1713098 lncRNA downstream 12400 84050925 ~ 84057495 (+) True G1498519
TU1713121 lncRNA downstream 28815 84067340 ~ 84067565 (+) True G1498540
TU1713125 lncRNA downstream 30013 84068538 ~ 84069086 (+) True G1498544
TU1713139 lncRNA downstream 38698 84077223 ~ 84077516 (+) True G1498558
XM_021570083.2 mRNA upstream 15233 84004256 ~ 84017161 (+) True LOC110494753
XM_021570082.2 mRNA upstream 125995 83903921 ~ 83906399 (+) True LOC110494751
XM_021570081.2 mRNA upstream 139778 83890323 ~ 83892616 (+) True LOC110494750
XM_036950796.1 mRNA upstream 142327 83879806 ~ 83890067 (+) False LOC110494749
XM_036950797.1 mRNA upstream 143979 83879805 ~ 83888415 (+) False LOC110494749
XM_036950806.1 mRNA downstream 41028 84079553 ~ 84150390 (+) False LOC110494755
XM_036950804.1 mRNA downstream 64834 84103359 ~ 84150390 (+) False LOC110494755
XM_036950805.1 mRNA downstream 64834 84103359 ~ 84150390 (+) False LOC110494755
XM_036950808.1 mRNA downstream 91969 84130494 ~ 84150390 (+) True LOC110494755
XM_036950809.1 mRNA downstream 170982 84209507 ~ 84352493 (+) False LOC110493278
TU1712638 other upstream 151206 83879932 ~ 83881188 (+) True LOC110494749
TU1712329 other upstream 397899 83614265 ~ 83634495 (+) True G1497918
TU1710572 other upstream 1862644 82163206 ~ 82169750 (+) False G1496351
TU1710167 other upstream 2199293 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 2430237 81432211 ~ 81602157 (+) True LOC110494696
TU1713169 other downstream 87312 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 457404 84495929 ~ 84497398 (+) True G1498913
TU1713556 other downstream 477592 84516117 ~ 84517180 (+) False G1498912
TU1713565 other downstream 489240 84527765 ~ 84554229 (+) False G1498912
TU1713564 other downstream 506065 84544590 ~ 84565607 (+) False G1498912

Expression Profile