RNA id: TU1713098


Basic Information

Item Value
RNA id TU1713098
length 615
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G1498519
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84050925 ~ 84057495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttccctgtccctactgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatttttaagaaatggctttcttgccactcttccataaaggccagatttgtgcaatatacaactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1713095 lncRNA upstream 3773 84046896 ~ 84047152 (+) True G1498517
TU1713070 lncRNA upstream 12400 84032394 ~ 84038525 (+) False G1498507
TU1713074 lncRNA upstream 17160 84032394 ~ 84033765 (+) False G1498507
TU1713069 lncRNA upstream 17270 84032394 ~ 84033655 (+) False G1498507
TU1713071 lncRNA upstream 17270 84032394 ~ 84033655 (+) False G1498507
TU1713121 lncRNA downstream 9845 84067340 ~ 84067565 (+) True G1498540
TU1713125 lncRNA downstream 11043 84068538 ~ 84069086 (+) True G1498544
TU1713139 lncRNA downstream 19728 84077223 ~ 84077516 (+) True G1498558
TU1713140 lncRNA downstream 20440 84077935 ~ 84078168 (+) True G1498559
TU1713160 lncRNA downstream 48342 84105837 ~ 84106451 (+) True G1498576
XM_021570083.2 mRNA upstream 33764 84004256 ~ 84017161 (+) True LOC110494753
XM_021570082.2 mRNA upstream 144526 83903921 ~ 83906399 (+) True LOC110494751
XM_021570081.2 mRNA upstream 158309 83890323 ~ 83892616 (+) True LOC110494750
XM_036950796.1 mRNA upstream 160858 83879806 ~ 83890067 (+) False LOC110494749
XM_036950797.1 mRNA upstream 162510 83879805 ~ 83888415 (+) False LOC110494749
XM_036950806.1 mRNA downstream 22058 84079553 ~ 84150390 (+) False LOC110494755
XM_036950804.1 mRNA downstream 45864 84103359 ~ 84150390 (+) False LOC110494755
XM_036950805.1 mRNA downstream 45864 84103359 ~ 84150390 (+) False LOC110494755
XM_036950808.1 mRNA downstream 72999 84130494 ~ 84150390 (+) True LOC110494755
XM_036950809.1 mRNA downstream 152012 84209507 ~ 84352493 (+) False LOC110493278
TU1712638 other upstream 169737 83879932 ~ 83881188 (+) True LOC110494749
TU1712329 other upstream 416430 83614265 ~ 83634495 (+) True G1497918
TU1710572 other upstream 1881175 82163206 ~ 82169750 (+) False G1496351
TU1710167 other upstream 2217824 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 2448768 81432211 ~ 81602157 (+) True LOC110494696
TU1713169 other downstream 68342 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 438434 84495929 ~ 84497398 (+) True G1498913
TU1713556 other downstream 458622 84516117 ~ 84517180 (+) False G1498912
TU1713565 other downstream 470270 84527765 ~ 84554229 (+) False G1498912
TU1713564 other downstream 487095 84544590 ~ 84565607 (+) False G1498912

Expression Profile