RNA id: TU1713140


Basic Information

Item Value
RNA id TU1713140
length 234
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1498559
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84077935 ~ 84078168 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctcaaaaattatgttggaggtggcttacggtagagaaatgaacaataAATGATCTGTCAACAgctgtggtggacattcctgaagtcagcttgccaattgcacgctccctcaaaacttgagacatctgtggcattgtgttgcgtgacaaaactgcacattttagagtgacaatttattgtccccagcacaaggtgcacctgtgtaatgatcatgctgtttaatcagcttcttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1713139 lncRNA upstream 419 84077223 ~ 84077516 (+) True G1498558
TU1713125 lncRNA upstream 8849 84068538 ~ 84069086 (+) True G1498544
TU1713121 lncRNA upstream 10370 84067340 ~ 84067565 (+) True G1498540
TU1713098 lncRNA upstream 20440 84050925 ~ 84057495 (+) True G1498519
TU1713095 lncRNA upstream 30783 84046896 ~ 84047152 (+) True G1498517
TU1713160 lncRNA downstream 27669 84105837 ~ 84106451 (+) True G1498576
TU1713198 lncRNA downstream 115259 84193427 ~ 84194061 (+) True G1498610
TU1713202 lncRNA downstream 125887 84204055 ~ 84204266 (+) True G1498614
TU1713208 lncRNA downstream 257123 84335291 ~ 84338255 (+) True G1498618
TU1713463 lncRNA downstream 286927 84365095 ~ 84365437 (+) True G1498839
XM_021570083.2 mRNA upstream 60774 84004256 ~ 84017161 (+) True LOC110494753
XM_021570082.2 mRNA upstream 171536 83903921 ~ 83906399 (+) True LOC110494751
XM_021570081.2 mRNA upstream 185319 83890323 ~ 83892616 (+) True LOC110494750
XM_036950796.1 mRNA upstream 187868 83879806 ~ 83890067 (+) False LOC110494749
XM_036950797.1 mRNA upstream 189520 83879805 ~ 83888415 (+) False LOC110494749
XM_036950806.1 mRNA downstream 1385 84079553 ~ 84150390 (+) False LOC110494755
XM_036950804.1 mRNA downstream 25191 84103359 ~ 84150390 (+) False LOC110494755
XM_036950805.1 mRNA downstream 25191 84103359 ~ 84150390 (+) False LOC110494755
XM_036950808.1 mRNA downstream 52326 84130494 ~ 84150390 (+) True LOC110494755
XM_036950809.1 mRNA downstream 131339 84209507 ~ 84352493 (+) False LOC110493278
TU1712638 other upstream 196747 83879932 ~ 83881188 (+) True LOC110494749
TU1712329 other upstream 443440 83614265 ~ 83634495 (+) True G1497918
TU1710572 other upstream 1908185 82163206 ~ 82169750 (+) False G1496351
TU1710167 other upstream 2244834 81828732 ~ 81833101 (+) False LOC110494698
TU1709526 other upstream 2475778 81432211 ~ 81602157 (+) True LOC110494696
TU1713169 other downstream 47669 84125837 ~ 84174177 (+) True G1498583
TU1713567 other downstream 417761 84495929 ~ 84497398 (+) True G1498913
TU1713556 other downstream 437949 84516117 ~ 84517180 (+) False G1498912
TU1713565 other downstream 449597 84527765 ~ 84554229 (+) False G1498912
TU1713564 other downstream 466422 84544590 ~ 84565607 (+) False G1498912

Expression Profile