RNA id: TU1713567


Basic Information

Item Value
RNA id TU1713567
length 1026
RNA type TUCP
GC content 0.47
exon number 2
gene id G1498913
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84495929 ~ 84497398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccatcatgacatctctctgtcttcctcatccctccatcatgacatctctctgtcttcctcctccatccatcatgacatctctctgtcttcctcctccctccatcattacatctctctgtcttcctcctccatccatcatgacatctctctgtcttcctcctccctccatcattacatcattacatctctctgtcttcctcctccctccatcatcacatctctctgtcttcctcctccctccatcatgacatctctctgtcttcctactccctccatcatgacatctctctgtcttcctcctccctccatcatgacatctctctgtcttcctactccctccatcatgacatctctctgtcttcctactccctccatcataacatctctctgtcttccttctccctccatcatgacatcgctctgtcttcctcctccctccatcattacatcattacatctctctgtcttcctcctccctccatcattacatctctctgtcttcctactccctccatcattacatctctctgtcttcctcctccctccatcattacatcattacatctctctgtcttcctactccctccatcattacatctctctgtcttcctcctccctccatcattacatcattacatctctctgtcttccttctccctccatcattacatcattacatctctctgtcttcctattccctccatcattacatctctctgtcttcatcctccctccatcattacatcatgcatctctctgtcttccttctccctccatcattacatctctctgtcttcctcctcgctccatcattacatcattacatctctctgtcttccttctccctccatcattacatccctctgtcttcctcctccctccatcattacatcattacatctctctgtcttcctcctccctccatcattacatctctctgtcttcctcctccctccatcattacatccctctgtcttcctcctccctccatcattacatcattacatctgtctgtcttcctactcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1713531 lncRNA upstream 1586 84454093 ~ 84494343 (+) True G1498891
TU1713527 lncRNA upstream 40917 84454093 ~ 84455012 (+) False G1498891
TU1713528 lncRNA upstream 40917 84454093 ~ 84455012 (+) False G1498891
TU1713486 lncRNA upstream 113328 84381842 ~ 84382601 (+) True G1498854
TU1713469 lncRNA upstream 126186 84368666 ~ 84369743 (+) True G1498845
TU1713557 lncRNA downstream 18719 84516117 ~ 84567678 (+) False G1498912
TU1713559 lncRNA downstream 18719 84516117 ~ 84535304 (+) False G1498912
TU1713581 lncRNA downstream 21178 84518576 ~ 84519731 (+) True G1498925
TU1713571 lncRNA downstream 31481 84528879 ~ 84546700 (+) True G1498915
TU1713588 lncRNA downstream 39644 84537042 ~ 84538816 (+) False G1498932
XM_036950818.1 mRNA upstream 12439 84480749 ~ 84483490 (+) False LOC118940500
XM_036950819.1 mRNA upstream 12439 84480749 ~ 84483490 (+) False LOC118940500
XR_005037090.1 mRNA upstream 12439 84480749 ~ 84483490 (+) True LOC118940500
XM_036950820.1 mRNA upstream 13483 84480749 ~ 84482446 (+) False LOC118940500
XM_036950809.1 mRNA upstream 143436 84209507 ~ 84352493 (+) False LOC110493278
XM_036950812.1 mRNA downstream 126417 84623815 ~ 84685038 (+) False LOC110493280
XM_036950822.1 mRNA downstream 218181 84715579 ~ 84718668 (+) False LOC110494759
XM_036950821.1 mRNA downstream 218183 84715581 ~ 84718668 (+) True LOC110494759
XM_036950813.1 mRNA downstream 234837 84732235 ~ 84765940 (+) False LOC110494762
XM_036950815.1 mRNA downstream 234838 84732236 ~ 84765940 (+) False LOC110494762
TU1713169 other upstream 321752 84125837 ~ 84174177 (+) True G1498583
TU1712638 other upstream 614741 83879932 ~ 83881188 (+) True LOC110494749
TU1712329 other upstream 861434 83614265 ~ 83634495 (+) True G1497918
TU1710572 other upstream 2326179 82163206 ~ 82169750 (+) False G1496351
TU1710167 other upstream 2662828 81828732 ~ 81833101 (+) False LOC110494698
TU1713556 other downstream 18719 84516117 ~ 84517180 (+) False G1498912
TU1713565 other downstream 30367 84527765 ~ 84554229 (+) False G1498912
TU1713564 other downstream 47192 84544590 ~ 84565607 (+) False G1498912
TU1713482 other downstream 180142 84677540 ~ 84685383 (+) True LOC110493280
TU1713884 other downstream 291734 84789132 ~ 84792500 (+) True LOC110493283

Expression Profile