RNA id: TU1713485


Basic Information

Item Value
RNA id TU1713485
length 502
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1498853
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84687817 ~ 84688318 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTCAAATATGTTTGCCTCTGGACAGTTTTTacagcagtgggctaaatcaaggTCACACACAGTGTTTCCTGGTTGTCATAAACAAATCTACTCTGAAagaaaagtatacacctcacacacacggttatgggcttaaaacaagaagacacctgtaccatgtcagatacagagttgacatgtattccattttgagtttgcGTCCCAATATTTCACTTtatgtacatcacagaagactgaaatataactaaACTAAACCGGAAACGAATTTTCGACATATTTTTTGAAAAAATGTTTGTTAATTAATGCTATATTGTAATTTACTTTACCGccatggcctgtttattgccgtacctcccttatctcacctcatttgcactcactgtatatagacttattatttactactgtattattgactgtatgttttgtttattccatgtgtaactctgtgttgttgtttgtgtcgcactgctttgttttatcttggccaggtcgcagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1713626 lncRNA upstream 67847 84618709 ~ 84619970 (+) True G1498967
TU1713557 lncRNA upstream 120139 84516117 ~ 84567678 (+) False G1498912
TU1713555 lncRNA upstream 121091 84545043 ~ 84566726 (+) False G1498912
TU1713566 lncRNA upstream 122210 84540689 ~ 84565607 (+) False G1498912
TU1713602 lncRNA upstream 125816 84560431 ~ 84562001 (+) True G1498944
TU1713823 lncRNA downstream 6191 84694509 ~ 84694733 (+) True G1499136
TU1713824 lncRNA downstream 7634 84695952 ~ 84696240 (+) True G1499137
TU1713825 lncRNA downstream 8811 84697129 ~ 84697346 (+) True G1499138
TU1713826 lncRNA downstream 14870 84703188 ~ 84703511 (+) True G1499139
TU1713827 lncRNA downstream 17624 84705942 ~ 84706282 (+) True G1499140
XM_036950811.1 mRNA upstream 2779 84379789 ~ 84685038 (+) False LOC110493280
XM_036950812.1 mRNA upstream 2779 84623815 ~ 84685038 (+) False LOC110493280
XM_036950818.1 mRNA upstream 204327 84480749 ~ 84483490 (+) False LOC118940500
XM_036950819.1 mRNA upstream 204327 84480749 ~ 84483490 (+) False LOC118940500
XR_005037090.1 mRNA upstream 204327 84480749 ~ 84483490 (+) True LOC118940500
XM_036950822.1 mRNA downstream 27261 84715579 ~ 84718668 (+) False LOC110494759
XM_036950821.1 mRNA downstream 27263 84715581 ~ 84718668 (+) True LOC110494759
XM_036950813.1 mRNA downstream 43917 84732235 ~ 84765940 (+) False LOC110494762
XM_036950815.1 mRNA downstream 43918 84732236 ~ 84765940 (+) False LOC110494762
XM_036950817.1 mRNA downstream 43918 84732236 ~ 84765940 (+) False LOC110494762
TU1713482 other upstream 2434 84677540 ~ 84685383 (+) True LOC110493280
TU1713564 other upstream 122210 84544590 ~ 84565607 (+) False G1498912
TU1713565 other upstream 133588 84527765 ~ 84554229 (+) False G1498912
TU1713556 other upstream 170637 84516117 ~ 84517180 (+) False G1498912
TU1713567 other upstream 190419 84495929 ~ 84497398 (+) True G1498913
TU1713884 other downstream 100814 84789132 ~ 84792500 (+) True LOC110493283
TU1713850 other downstream 122213 84810531 ~ 84811185 (+) True G1499159
TU1714100 other downstream 526475 85214793 ~ 85216073 (+) True G1499347
TU1714110 other downstream 580808 85269126 ~ 85288116 (+) False LOC110494772
TU1714111 other downstream 580808 85269126 ~ 85287417 (+) False LOC110494772

Expression Profile