RNA id: TU1713827


Basic Information

Item Value
RNA id TU1713827
length 341
lncRNA type intronic
GC content 0.41
exon number 1
gene id G1499140
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84705942 ~ 84706282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcaggaccaaatcagagagatagataggagcaagcccatgtaatgctttgtaggttagcagtaaaaccttgaaatcagcccttgctttgacaggaagccagtgtagagaggctagcactggagtaatatgatcaaatttgttggttctagtcaggattctagcagccgtatttagcactaactgaagtttatttagtgctttatccgggtagccggaaagtagagcattgcagtagtctaacctggaagtgacaaaagcatggattaatttttctgcatcatttttggacagaaagttcctgatttttgcaatgttacgtagatggaaaaaagctgtcctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1713826 lncRNA upstream 2431 84703188 ~ 84703511 (+) True G1499139
TU1713825 lncRNA upstream 8596 84697129 ~ 84697346 (+) True G1499138
TU1713824 lncRNA upstream 9702 84695952 ~ 84696240 (+) True G1499137
TU1713823 lncRNA upstream 11209 84694509 ~ 84694733 (+) True G1499136
TU1713485 lncRNA upstream 17624 84687817 ~ 84688318 (+) True G1498853
TU1713829 lncRNA downstream 1692 84707974 ~ 84708286 (+) True G1499142
TU1713835 lncRNA downstream 5848 84712130 ~ 84712416 (+) True G1499146
TU1713852 lncRNA downstream 17250 84723532 ~ 84723805 (+) True G1499161
TU1713872 lncRNA downstream 25027 84731309 ~ 84731684 (+) True G1499164
TU1713886 lncRNA downstream 31030 84737312 ~ 84738187 (+) True G1499169
XM_036950812.1 mRNA upstream 20904 84623815 ~ 84685038 (+) False LOC110493280
XM_036950818.1 mRNA upstream 222452 84480749 ~ 84483490 (+) False LOC118940500
XM_036950819.1 mRNA upstream 222452 84480749 ~ 84483490 (+) False LOC118940500
XR_005037090.1 mRNA upstream 222452 84480749 ~ 84483490 (+) True LOC118940500
XM_036950820.1 mRNA upstream 223496 84480749 ~ 84482446 (+) False LOC118940500
XM_036950822.1 mRNA downstream 9297 84715579 ~ 84718668 (+) False LOC110494759
XM_036950821.1 mRNA downstream 9299 84715581 ~ 84718668 (+) True LOC110494759
XM_036950813.1 mRNA downstream 25953 84732235 ~ 84765940 (+) False LOC110494762
XM_036950815.1 mRNA downstream 25954 84732236 ~ 84765940 (+) False LOC110494762
XM_036950817.1 mRNA downstream 25954 84732236 ~ 84765940 (+) False LOC110494762
TU1713482 other upstream 20559 84677540 ~ 84685383 (+) True LOC110493280
TU1713564 other upstream 140335 84544590 ~ 84565607 (+) False G1498912
TU1713565 other upstream 151713 84527765 ~ 84554229 (+) False G1498912
TU1713556 other upstream 188762 84516117 ~ 84517180 (+) False G1498912
TU1713567 other upstream 208544 84495929 ~ 84497398 (+) True G1498913
TU1713884 other downstream 82850 84789132 ~ 84792500 (+) True LOC110493283
TU1713850 other downstream 104249 84810531 ~ 84811185 (+) True G1499159
TU1714100 other downstream 508511 85214793 ~ 85216073 (+) True G1499347
TU1714110 other downstream 562844 85269126 ~ 85288116 (+) False LOC110494772
TU1714111 other downstream 562844 85269126 ~ 85287417 (+) False LOC110494772

Expression Profile