RNA id: TU1713829


Basic Information

Item Value
RNA id TU1713829
length 313
lncRNA type intronic
GC content 0.37
exon number 1
gene id G1499142
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84707974 ~ 84708286 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACATCTGGGTATCTGGGTTGACGAAAAGCTAATATGTTGATGAGTTAGTTAAGAAATTATGAATTAAAATGGGCTTATTTTATAGGAATAAGTCATGCCTTTCATTAAATAGCAGCAAACAAATAATTCAGACAGCATTCATACCGGTTATAGACTATGGAGATATTGTCTATAGGAATGCAGCTGCCACTTAGCTTTGTTACGGGCGTTAGGTTCAGTACACATCAATGCATTCTGTATCAAAAGGTAGACTGACCCTCTTTGAAGTCTGTAGGTCAATGCAATGCACTCATTCGGTTTATAAACCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1713827 lncRNA upstream 1692 84705942 ~ 84706282 (+) True G1499140
TU1713826 lncRNA upstream 4463 84703188 ~ 84703511 (+) True G1499139
TU1713825 lncRNA upstream 10628 84697129 ~ 84697346 (+) True G1499138
TU1713824 lncRNA upstream 11734 84695952 ~ 84696240 (+) True G1499137
TU1713823 lncRNA upstream 13241 84694509 ~ 84694733 (+) True G1499136
TU1713835 lncRNA downstream 3844 84712130 ~ 84712416 (+) True G1499146
TU1713852 lncRNA downstream 15246 84723532 ~ 84723805 (+) True G1499161
TU1713872 lncRNA downstream 23023 84731309 ~ 84731684 (+) True G1499164
TU1713886 lncRNA downstream 29026 84737312 ~ 84738187 (+) True G1499169
TU1713894 lncRNA downstream 61362 84769648 ~ 84769979 (+) True G1499177
XM_036950812.1 mRNA upstream 22936 84623815 ~ 84685038 (+) False LOC110493280
XM_036950818.1 mRNA upstream 224484 84480749 ~ 84483490 (+) False LOC118940500
XM_036950819.1 mRNA upstream 224484 84480749 ~ 84483490 (+) False LOC118940500
XR_005037090.1 mRNA upstream 224484 84480749 ~ 84483490 (+) True LOC118940500
XM_036950820.1 mRNA upstream 225528 84480749 ~ 84482446 (+) False LOC118940500
XM_036950822.1 mRNA downstream 7293 84715579 ~ 84718668 (+) False LOC110494759
XM_036950821.1 mRNA downstream 7295 84715581 ~ 84718668 (+) True LOC110494759
XM_036950813.1 mRNA downstream 23949 84732235 ~ 84765940 (+) False LOC110494762
XM_036950815.1 mRNA downstream 23950 84732236 ~ 84765940 (+) False LOC110494762
XM_036950817.1 mRNA downstream 23950 84732236 ~ 84765940 (+) False LOC110494762
TU1713482 other upstream 22591 84677540 ~ 84685383 (+) True LOC110493280
TU1713564 other upstream 142367 84544590 ~ 84565607 (+) False G1498912
TU1713565 other upstream 153745 84527765 ~ 84554229 (+) False G1498912
TU1713556 other upstream 190794 84516117 ~ 84517180 (+) False G1498912
TU1713567 other upstream 210576 84495929 ~ 84497398 (+) True G1498913
TU1713884 other downstream 80846 84789132 ~ 84792500 (+) True LOC110493283
TU1713850 other downstream 102245 84810531 ~ 84811185 (+) True G1499159
TU1714100 other downstream 506507 85214793 ~ 85216073 (+) True G1499347
TU1714110 other downstream 560840 85269126 ~ 85288116 (+) False LOC110494772
TU1714111 other downstream 560840 85269126 ~ 85287417 (+) False LOC110494772

Expression Profile