RNA id: TU1713852


Basic Information

Item Value
RNA id TU1713852
length 274
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1499161
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84723532 ~ 84723805 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgaatatataaaataataaaatggaaacatcacatttacatatgtattcagaccctttattcagtactttgttgtagcaCCTTTGACAGCTATTACAGCCTAgaatcttcttgggtaggacgctacaagcttgacacacctggtTCTGGGTacttctcccattctctgcagatcctctaaagctctgtcaaattggatggggagcgtcgctgcacagctattttcaggtctctccagagatatttgatcgggttcaagtctggagtctggctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1713835 lncRNA upstream 11116 84712130 ~ 84712416 (+) True G1499146
TU1713829 lncRNA upstream 15246 84707974 ~ 84708286 (+) True G1499142
TU1713827 lncRNA upstream 17250 84705942 ~ 84706282 (+) True G1499140
TU1713826 lncRNA upstream 20021 84703188 ~ 84703511 (+) True G1499139
TU1713825 lncRNA upstream 26186 84697129 ~ 84697346 (+) True G1499138
TU1713872 lncRNA downstream 7504 84731309 ~ 84731684 (+) True G1499164
TU1713886 lncRNA downstream 13507 84737312 ~ 84738187 (+) True G1499169
TU1713894 lncRNA downstream 45843 84769648 ~ 84769979 (+) True G1499177
TU1713897 lncRNA downstream 49079 84772884 ~ 84773169 (+) True G1499180
TU1713916 lncRNA downstream 103401 84827206 ~ 84836536 (+) True G1499197
XM_036950822.1 mRNA upstream 4864 84715579 ~ 84718668 (+) False LOC110494759
XM_036950821.1 mRNA upstream 4864 84715581 ~ 84718668 (+) True LOC110494759
XM_036950812.1 mRNA upstream 38494 84623815 ~ 84685038 (+) False LOC110493280
XM_036950818.1 mRNA upstream 240042 84480749 ~ 84483490 (+) False LOC118940500
XM_036950819.1 mRNA upstream 240042 84480749 ~ 84483490 (+) False LOC118940500
XM_036950813.1 mRNA downstream 8430 84732235 ~ 84765940 (+) False LOC110494762
XM_036950815.1 mRNA downstream 8431 84732236 ~ 84765940 (+) False LOC110494762
XM_036950817.1 mRNA downstream 8431 84732236 ~ 84765940 (+) False LOC110494762
XM_036950814.1 mRNA downstream 8524 84732329 ~ 84765940 (+) False LOC110494762
XM_036950816.1 mRNA downstream 8528 84732333 ~ 84765940 (+) True LOC110494762
TU1713482 other upstream 38149 84677540 ~ 84685383 (+) True LOC110493280
TU1713564 other upstream 157925 84544590 ~ 84565607 (+) False G1498912
TU1713565 other upstream 169303 84527765 ~ 84554229 (+) False G1498912
TU1713556 other upstream 206352 84516117 ~ 84517180 (+) False G1498912
TU1713567 other upstream 226134 84495929 ~ 84497398 (+) True G1498913
TU1713884 other downstream 65327 84789132 ~ 84792500 (+) True LOC110493283
TU1713850 other downstream 86726 84810531 ~ 84811185 (+) True G1499159
TU1714100 other downstream 490988 85214793 ~ 85216073 (+) True G1499347
TU1714110 other downstream 545321 85269126 ~ 85288116 (+) False LOC110494772
TU1714111 other downstream 545321 85269126 ~ 85287417 (+) False LOC110494772

Expression Profile