RNA id: TU1713872


Basic Information

Item Value
RNA id TU1713872
length 376
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G1499164
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 84731309 ~ 84731684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttattaatttcaaatcaatacataaagcacatgagggaacacaagcatacatagattacaaacaatagacaatcgagctagggggtacaatatcacattacaattacacaaggaccttaagggacatgcatatacttacaattctaacagcttttttgttagtagagcatttaactgtcttaaaatacagttcaatttctttttgtagggtacgaaaatgtggttttctgtttgtaaatttacatttgtgtatatgaaatttggccaaaagaataatgaaattaattacataaaaatgattccgcttatttctattgtatgtaaagaatccaaacagtacatctctccacaatagtgtaaaatcttcataaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1713852 lncRNA upstream 7504 84723532 ~ 84723805 (+) True G1499161
TU1713835 lncRNA upstream 18893 84712130 ~ 84712416 (+) True G1499146
TU1713829 lncRNA upstream 23023 84707974 ~ 84708286 (+) True G1499142
TU1713827 lncRNA upstream 25027 84705942 ~ 84706282 (+) True G1499140
TU1713826 lncRNA upstream 27798 84703188 ~ 84703511 (+) True G1499139
TU1713886 lncRNA downstream 5628 84737312 ~ 84738187 (+) True G1499169
TU1713894 lncRNA downstream 37964 84769648 ~ 84769979 (+) True G1499177
TU1713897 lncRNA downstream 41200 84772884 ~ 84773169 (+) True G1499180
TU1713916 lncRNA downstream 95522 84827206 ~ 84836536 (+) True G1499197
TU1713940 lncRNA downstream 161049 84892733 ~ 84892972 (+) True G1499215
XM_036950822.1 mRNA upstream 12641 84715579 ~ 84718668 (+) False LOC110494759
XM_036950821.1 mRNA upstream 12641 84715581 ~ 84718668 (+) True LOC110494759
XM_036950812.1 mRNA upstream 46271 84623815 ~ 84685038 (+) False LOC110493280
XM_036950819.1 mRNA upstream 247819 84480749 ~ 84483490 (+) False LOC118940500
XM_036950813.1 mRNA downstream 551 84732235 ~ 84765940 (+) False LOC110494762
XM_036950815.1 mRNA downstream 552 84732236 ~ 84765940 (+) False LOC110494762
XM_036950817.1 mRNA downstream 552 84732236 ~ 84765940 (+) False LOC110494762
XM_036950814.1 mRNA downstream 645 84732329 ~ 84765940 (+) False LOC110494762
XM_036950816.1 mRNA downstream 649 84732333 ~ 84765940 (+) True LOC110494762
TU1713482 other upstream 45926 84677540 ~ 84685383 (+) True LOC110493280
TU1713564 other upstream 165702 84544590 ~ 84565607 (+) False G1498912
TU1713565 other upstream 177080 84527765 ~ 84554229 (+) False G1498912
TU1713556 other upstream 214129 84516117 ~ 84517180 (+) False G1498912
TU1713567 other upstream 233911 84495929 ~ 84497398 (+) True G1498913
TU1713884 other downstream 57448 84789132 ~ 84792500 (+) True LOC110493283
TU1713850 other downstream 78847 84810531 ~ 84811185 (+) True G1499159
TU1714100 other downstream 483109 85214793 ~ 85216073 (+) True G1499347
TU1714110 other downstream 537442 85269126 ~ 85288116 (+) False LOC110494772
TU1714111 other downstream 537442 85269126 ~ 85287417 (+) False LOC110494772

Expression Profile